Clone FMO12889 Report

Search the DGRC for FMO12889

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:89
Vector:pMK33-CFH-BD
Associated Gene/TranscriptmRpL52-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12889.5prime Sequence

404 bp (404 high quality bases) assembled on 2013-01-29

> FMO12889.5prime
CAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCTCCGCCACA
AGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCCATTGATCA
GAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGCCTTTGGCC
CACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGCCCACGCCG
CTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAGATCGCCAC
CAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCAGCGACATG
AACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCATCCGCAGC
AAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAAGCAAGCTTTCTAGA
CCAT

FMO12889.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..475 9..386 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673804..7673983 386..207 900 100 Minus
2R 25286936 2R 7674043..7674195 207..55 765 100 Minus
2R 25286936 2R 7674255..7674303 57..9 245 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:26:42 has no hits.

FMO12889.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:24 Download gff for FMO12889.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 101..482 9..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:07 Download gff for FMO12889.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..479 9..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:28 Download gff for FMO12889.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..479 9..392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:28 Download gff for FMO12889.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7673800..7673983 207..392 98 <- Minus
2R 7674044..7674192 58..206 100 <- Minus
2R 7674255..7674303 9..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:07 Download gff for FMO12889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561305..3561488 207..392 98 <- Minus
arm_2R 3561549..3561697 58..206 100 <- Minus
arm_2R 3561760..3561808 9..57 100   Minus