FMO12890.5prime Sequence
397 bp (-85 high quality bases) assembled on 2013-01-29
> FMO12890.5prime
CAGTCCACATGCAGTCCGTGAAAGTGATCTTTGTTCTGTCTGTGACCCTG
GCGGTTGCCTTTGCTAACCCGAGGTTGCCGCCCGGTGCCCCGAAGCCGCT
GGATGGAGATGACTTATCCCAGGCTAAGGAGCTCTTGGACACAACGCTCG
CCAAACTTGCCACAGGAGATGGTCCCAATTATCAGGTAGTGAATGTGATC
TCGGCATCTAGCCAACTGGTGGCTGGGTCGCTCTACAAATTCGAGGTGAA
GCTGTCCAACGGAACCGAGACCAAGGAGTGCAACGTAAAGATCTGGGACA
GGCCATGGCTGCAGAGCATGGGGAGGCCACCAATGTGAAGGTCCAGTGCA
AGGATGAAGATGTGCTCGAGAAGATCTGGGCAAGCTTTCTAGACCAT
FMO12890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31313-RB | 470 | CG31313-RB | 32..403 | 9..379 | 1775 | 98.7 | Plus |
| CG31313-RA | 782 | CG31313-RA | 32..403 | 9..379 | 1775 | 98.7 | Plus |
| CG31313-RC | 645 | CG31313-RC | 32..414 | 9..379 | 1655 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14566811..14567006 | 379..185 | 885 | 98 | Minus |
| 3R | 32079331 | 3R | 14567164..14567280 | 185..69 | 570 | 99.1 | Minus |
| 3R | 32079331 | 3R | 14567339..14567398 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:48 has no hits.
FMO12890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:24 Download gff for
FMO12890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31313-RA | 23..400 | 2..379 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:10 Download gff for
FMO12890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31313-RA | 26..403 | 2..379 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:30 Download gff for
FMO12890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31313-RA | 26..403 | 2..379 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:30 Download gff for
FMO12890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14566811..14567006 | 185..379 | 97 | <- | Minus |
| 3R | 14567165..14567280 | 69..184 | 99 | <- | Minus |
| 3R | 14567339..14567404 | 2..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:10 Download gff for
FMO12890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10392533..10392728 | 185..379 | 97 | <- | Minus |
| arm_3R | 10392887..10393002 | 69..184 | 99 | <- | Minus |
| arm_3R | 10393061..10393126 | 2..68 | 94 | | Minus |
