FMO12893.5prime Sequence
1077 bp (934 high quality bases) assembled on 2013-01-29
> FMO12893.5prime
CAGTCCACATGTCGAACCTGTATGTGCTGTACGAGCATGCGGCGGGCTTC
TCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTCCTGCCCCA
GGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAATTGTTAAGC
TGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGGAAAACATC
AATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCCTTCTTGGA
TGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGGTATTGCGG
ATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCCAGTGCAGT
CACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTCCACTTCGC
TAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGCTCAGCTGG
GTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATGTTCATCGT
TCCGACAACATGATCATCCAGTCAATTGCTTTGCTGGATCAGTTGGATAA
GGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTCGTATCACT
TCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCGCCAAGGCG
GCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAGCTGGAGGA
TCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCATGCTATCATTGGTG
CCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATCTGATGAAC
ATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTACCGAAGAAA
CTGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCACCAATCTGCAG
TCTTTGATTGCGACCAAGTCAGTGCCTGCCTGATATCGCATGCCGGCAGC
TTGACTAATCTGGCCCAGTACCAAGCATCTACAGTACAATCCTGGGTGAC
GAGAACGGCCCCTCTCGGGCTCTTAAGATCCGCTCCAATACGCCGAGTAT
GTCTTATCTATCACTCTCGTTCAATGG
FMO12893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 111..1188 | 7..1077 | 4915 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419665..22420323 | 1066..414 | 2710 | 96.2 | Minus |
| 3R | 32079331 | 3R | 22420387..22420791 | 415..11 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:08 has no hits.
FMO12893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:26 Download gff for
FMO12893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1188 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:22 Download gff for
FMO12893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1188 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:41 Download gff for
FMO12893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1188 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:41 Download gff for
FMO12893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22419653..22420322 | 415..1077 | 96 | <- | Minus |
| 3R | 22420388..22420796 | 1..414 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:22 Download gff for
FMO12893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18245375..18246044 | 415..1077 | 96 | <- | Minus |
| arm_3R | 18246110..18246518 | 1..414 | 98 | | Minus |
