FMO12895.5prime Sequence
889 bp (889 high quality bases) assembled on 2013-01-29
> FMO12895.5prime
CAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATATTGTTCTGC
GGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGA
TGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTT
TCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTC
TACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCAC
AAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGC
GCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGC
TATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAA
TGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACGGCGCCAT
CTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATGAGCTGTAC
AGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCGCGAGCCAG
TTCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGAGCCGAGGA
CCGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGGCGGAGTTC
GATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGGGACATGCC
CGTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAAGGCTGCAG
GCAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGAGCTCCAGCA
GCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAACCCACGCCC
GATGTGGATGTGGAAAACTACGCAAGCTTCTAGACCATT
FMO12895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RG | 2534 | CG42678-RG | 475..1338 | 9..871 | 4295 | 99.9 | Plus |
| CG42678-RE | 1469 | CG42678-RE | 411..1274 | 9..871 | 4295 | 99.9 | Plus |
| CG42678-RD | 1573 | CG42678-RD | 547..1378 | 41..871 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22929086..22929534 | 424..871 | 2195 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22927250..22927448 | 114..312 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 22927513..22927629 | 309..425 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 22927099..22927173 | 41..115 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:13 has no hits.
FMO12895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:20 Download gff for
FMO12895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RE | 420..1303 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:49 Download gff for
FMO12895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RE | 403..1286 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:15 Download gff for
FMO12895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RE | 403..1286 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:15 Download gff for
FMO12895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22927099..22927171 | 41..113 | 100 | -> | Plus |
| 2R | 22927250..22927447 | 114..311 | 100 | -> | Plus |
| 2R | 22927516..22927629 | 312..425 | 100 | -> | Plus |
| 2R | 22929088..22929546 | 426..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:49 Download gff for
FMO12895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18814622..18814694 | 41..113 | 100 | -> | Plus |
| arm_2R | 18814773..18814970 | 114..311 | 100 | -> | Plus |
| arm_2R | 18815039..18815152 | 312..425 | 100 | -> | Plus |
| arm_2R | 18816611..18817069 | 426..882 | 98 | | Plus |
