FMO12896.5prime Sequence
861 bp (861 high quality bases) assembled on 2013-01-29
> FMO12896.5prime
CAGTCGACATGTGCCTGGTGGCAGTCGCCTGCGCCGATAAGCTCGGCTAC
AACTACCAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTTGCTCCTGG
AAGTGGCAGCATTGGAGGTGGATCCATTGGAGGTGGTTCGATTGGAGGAG
GCTCCATTGGAGGAGGATCCATTGGAGGAGGCCTCATTGGTGGTGGCTCT
ATCGGAGGCGGTTCCATTGGAGGTGGTTCCCTTGGTGGTTCCATCGGTGG
TGGCTCTATTGATTCCGGTCTTGGCGGTCTTGGTGGACTCGGTGGTCTAG
GAGGTGGCGACGCTCTGGCCGCTCCAGTCTCCTACAACGCCCCCGCTCCC
GCTGCTGAGCTCCAGAAGGAGTTCTTCACCTACTCCGCCAACGAGCAGGA
CTTCGATGAGCCACAAGAACTGGAGCGTGTTGCTGGATCCGTAAACAAGG
GACTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGTCTGGAGAAC
GCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACCGCCATCTA
TGTCCTGAACAAGCAGGCCGATATTGGAGATCTTGCCCAGAAACTGAACG
CCATCCGCAACAACAATAACAACAAGCCCGAGGTGCACTTCGTCAAGTAC
CGCACTCCCGAGGATGCTGCCAACGCCCAGCGCGCCATCCAGTCGCAGTA
CGACCAATTGGGAGGATCCTCTCACGCCCACAACGGTGGTGTGGCACCCG
CCCTGAACTTCTCCTCCGCTGGTCCCGTCCAGAAGCTAATGCTCAGATCC
CTGAGAACGCTTACCTGCCCACTTCCATCTTCCGTCGTCGTTTGCAAGCT
TTCTAGACCAT
FMO12896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 69..905 | 9..844 | 4130 | 99.6 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..969 | 9..844 | 4130 | 99.6 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 73..897 | 16..839 | 3290 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624684..26625520 | 844..9 | 4105 | 99.6 | Minus |
| 3R | 32079331 | 3R | 26622579..26623403 | 839..16 | 3265 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26632323..26632775 | 320..772 | 1695 | 91.6 | Plus |
| 3R | 32079331 | 3R | 26619592..26620034 | 327..769 | 1480 | 88.9 | Plus |
| 3R | 32079331 | 3R | 26630220..26630615 | 366..761 | 1065 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 767..360 | 1035 | 83.6 | Minus |
| 3R | 32079331 | 3R | 26634088..26634492 | 357..761 | 870 | 81 | Plus |
| 3R | 32079331 | 3R | 26626108..26626448 | 778..438 | 850 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26619262..26619485 | 9..235 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620774..26621063 | 745..456 | 445 | 76.9 | Minus |
| 3R | 32079331 | 3R | 26631943..26632040 | 3..100 | 340 | 89.8 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 516..710 | 315 | 77.4 | Plus |
| 3R | 32079331 | 3R | 26656956..26657058 | 465..567 | 275 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:07 has no hits.
FMO12896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:29 Download gff for
FMO12896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..972 | 3..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:55 Download gff for
FMO12896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..972 | 3..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:46 Download gff for
FMO12896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..972 | 3..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:46 Download gff for
FMO12896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624681..26625523 | 3..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:55 Download gff for
FMO12896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450403..22451245 | 3..847 | 99 | | Minus |
