FMO12903.5prime Sequence
1101 bp (986 high quality bases) assembled on 2013-01-29
> FMO12903.5prime
CAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCCAGCAGGGA
AATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGATGAGGATGA
CCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGGCGAGAGCC
CCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGCACAAGGAG
ATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCGGCGGGCAT
TCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGAGGCGTACG
TGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGCTGAACAAG
GCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACGCCCAAGGA
GGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGCCTTCGTTG
TGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAATCGAGGAG
TTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATACTTTTTGT
TATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCAGTTCGAAA
GCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAAAAATTGGG
CACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATGAAGAGGGC
CACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGGCCCTTATGACATAC
GTGATCGTGGTGCCAACCGTGGTGGCAATGATTTCGGCGGAGGGCGCAAT
GATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAACATGCTGGG
CTTCAACATCTGCCAAGCCTGATGAACTCGGGCAACTTTGGAAACACAAG
TGGAAATAATGCAATTTGGAAATACTCTGGACCCAGCATTTCGGCAACTT
TGGTGCGCACACGGTGGAAATTCGCACTTTGAAACGAACGTGTACAGCGA
AACTTGGAACTTCCGCCATATGGAGCCGAACTCCGCGCCACAACACCGGC
GGCGTGTTCACATGCACACCTCAATCCCCGAGGCTAAATCGCACATTGGC
T
FMO12903.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| glo-RA | 2117 | CG6946-RA | 148..1219 | 9..1054 | 4570 | 96.5 | Plus |
| glo-RB | 2129 | CG6946-RB | 73..1144 | 9..1054 | 4570 | 96.5 | Plus |
| glo-RC | 2059 | CG6946-RC | 148..650 | 9..511 | 2470 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11818569..11818942 | 382..9 | 1810 | 98.9 | Minus |
| 3R | 32079331 | 3R | 11816612..11816759 | 801..654 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11817192..11817339 | 657..510 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11818005..11818139 | 511..377 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 11816383..11816549 | 955..797 | 480 | 92.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:45 has no hits.
FMO12903.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:30 Download gff for
FMO12903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..1067 | 9..987 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:46 Download gff for
FMO12903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..1067 | 9..987 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:01 Download gff for
FMO12903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| glo-RB | 73..1067 | 9..987 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:01 Download gff for
FMO12903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11816361..11816544 | 802..973 | 92 | <- | Minus |
| 3R | 11816612..11816757 | 656..801 | 100 | <- | Minus |
| 3R | 11817194..11817338 | 511..655 | 100 | <- | Minus |
| 3R | 11818006..11818137 | 379..510 | 100 | <- | Minus |
| 3R | 11818573..11818942 | 9..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:46 Download gff for
FMO12903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7642083..7642266 | 802..973 | 92 | <- | Minus |
| arm_3R | 7642334..7642479 | 656..801 | 100 | <- | Minus |
| arm_3R | 7642916..7643060 | 511..655 | 100 | <- | Minus |
| arm_3R | 7643728..7643859 | 379..510 | 100 | <- | Minus |
| arm_3R | 7644295..7644664 | 9..378 | 99 | | Minus |
