FMO12905.5prime Sequence
903 bp (903 high quality bases) assembled on 2013-01-29
> FMO12905.5prime
CAGTCGACATGGCCGCCAAAACACCGACATACCCAGATCTGGGCAAGCTG
GCCCGCGATCTCTTCAAGCGCGGCTACCATCCGGGCATCTGGCAGATCGA
CTGCAAGACCCTGACCAATTCGGGGATTGAGTTCTTCACCACCGGCTTCG
CCAGCCAGGACAACAGCAAGGTGACCGGCTCGCTTCAGAGCAAGTACAAG
ATCGAGGACCAAGGCCTGACCCTAACCGAGCGATGGAACACGGAGAACTG
GCTCTTCGGTGAGATTATGCACCGGGATAAGTTGGCACAGGGCCTGATGT
TGGCCGTCGAGGCCAAGTTTCAGCCGGGATCAAATGAGGCGGATGGCAAG
TTCAAGATGGGCTATGCCCAGGACAACTTTAACTTCCTGGCCGACATTGG
ACTGAACTCGGAGCCGATACTCAACTGTTCGCTGGTTGTGGGCCACAAGG
AGTTCCTCGGCGGCGTGGGCACCGAATTTGACGTTGGCAACACCGAACTC
AAGGGCTGGAAGGTGGCCCTTGGTTGGACAAATGAAACTGCCACCCTCCA
TGGCGAGCTGAAGAACGGCGACACCTGGTTGGCCTCGCTGTTCTACAAGG
CGAGCGAGAAGATCGATGCCGGTATCGAGGTAACCAAGGGAGCCGGCGGC
GGCGAAGCTGCCGAGGGTGAACAGCAGGGCGGAGATGTGGTCGTCAATCT
GGGCATGATCTACCACTTGGAGGAGGATGCCCTCGTACGCGCCAAGGTCA
ACAACCTGTGGAGCTGGGCCTGGGCTATGAACAGAAACTGCGCGACGGCA
TCACCGCCTCCATATCCGCCGTGCTGGATTGCAACAACTTTAAAGACGGA
AACCATCGGTTCGGCGTGGGAATTGCCCTCCAGTGCGCAGCTTTCTAGAC
CAT
FMO12905.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 88..966 | 9..886 | 4355 | 99.8 | Plus |
| Porin2-RA | 1128 | CG17137-RA | 147..1025 | 9..886 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10846573..10846898 | 334..9 | 1630 | 100 | Minus |
| 2L | 23513712 | 2L | 10845891..10846218 | 886..560 | 1575 | 99.4 | Minus |
| 2L | 23513712 | 2L | 10846281..10846506 | 560..335 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:51 has no hits.
FMO12905.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:31 Download gff for
FMO12905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 138..1025 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:50 Download gff for
FMO12905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 138..1025 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:06 Download gff for
FMO12905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 138..1025 | 1..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:06 Download gff for
FMO12905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10846282..10846506 | 335..559 | 100 | <- | Minus |
| 2L | 10845891..10846218 | 560..886 | 99 | <- | Minus |
| 2L | 10846573..10846902 | 1..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:50 Download gff for
FMO12905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10845891..10846218 | 560..886 | 99 | <- | Minus |
| arm_2L | 10846282..10846506 | 335..559 | 100 | <- | Minus |
| arm_2L | 10846573..10846902 | 1..334 | 98 | | Minus |
