FMO12906.5prime Sequence
926 bp (926 high quality bases) assembled on 2013-01-29
> FMO12906.5prime
CAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCTTGGCCAGG
AGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAACTCCAAAGG
AATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAACCACACATT
TCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGGTTCACGAG
GTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGATGCCATGTC
CCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACGACTGGGTC
CCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCGGGGACATC
ACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCCCAACAGCG
TCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCTAAACGTGG
GCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGCTGTCCAAC
TGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCCTTCCCGGA
CGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAACTGCACAC
ATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGCCGGGCGGA
CGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACGATGCAATG
GCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGGCCAATTGC
TGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCATCCGACGG
TTTCCCAAGCAGGAGCAATTCAAGCAAATGATCGAGCAGGCCGGATTCGA
TCAGTGTCCTACGAGAACCTAACCTTCGGCGTGTCAGCATTCACTCCGGC
TTCAACTGGCAAGCTTTCTAGACCAT
FMO12906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2453-RC | 1347 | CG2453-RC | 204..1102 | 9..905 | 4430 | 99.7 | Plus |
| CG2453-RB | 1231 | CG2453-RB | 88..986 | 9..905 | 4430 | 99.7 | Plus |
| CG2453-RA | 1188 | CG2453-RA | 45..943 | 9..905 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13193686..13194107 | 613..192 | 2110 | 100 | Minus |
| X | 23542271 | X | 13193339..13193638 | 905..608 | 1385 | 99 | Minus |
| X | 23542271 | X | 13194165..13194348 | 192..9 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:27:55 has no hits.
FMO12906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:31 Download gff for
FMO12906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2453-RA | 19..935 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:52 Download gff for
FMO12906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2453-RA | 19..935 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:08 Download gff for
FMO12906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2453-RA | 38..954 | 1..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:08 Download gff for
FMO12906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13193328..13193634 | 612..914 | 97 | <- | Minus |
| X | 13193688..13194106 | 193..611 | 100 | <- | Minus |
| X | 13194165..13194355 | 1..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:52 Download gff for
FMO12906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13087361..13087667 | 612..914 | 97 | <- | Minus |
| arm_X | 13087721..13088139 | 193..611 | 100 | <- | Minus |
| arm_X | 13088198..13088388 | 1..192 | 97 | | Minus |
