FMO12907.5prime Sequence
1139 bp (1021 high quality bases) assembled on 2013-01-29
> FMO12907.5prime
CAGTCGACATGACTGTTACCTGTGAAATTGATTTCGATAACAATCCCCAT
GGCACCTACTTTGGGGGCGAGGTACTCACTGGCAGAGTTACGTTGAAGCT
GGACAAGATGAAGTTGGTAAAAGCCATCACCTTGAATATAACCGGATACG
CAGAGACGCGTTGGATTGAAAGGGTGACCACAAACAGAAGGAGGAGACGT
CGCACATTCTGCGGCCGCGAGGATTACATAGCGTCCAAAACATTTTTGGT
GGGATCCAATCTGAGCAGCCAAGTATCCATTGAAGCGGGAATTCACACTT
ACAACTTCGTGTGCCTGATTCCCACCGAATGTCCTTCGTCCTTCGAGGGA
TCACACGGCAGGGTGCGGTACATGGCAACCGTAACCCTCGTCAGGCCCTG
GAAATTCGATCAGAGCTATACCCGATGCTTTACGGTGCTAAAAGTGATGG
ACTTGAACTTCGATAGTCCACTGCTAAGGGTACCCGCCCACAGTGAAACC
TCGAAGACCTACTGCTGCTGGCCTTGCCGATCAGATCCGTTGGCCCTCCA
ACTGACCGTTCCACAGACAGGATTTGTACCTGGCCAGAATGTTCCCCTTA
GCGTGCTGGTCACAAACGATAGCCACATTCCGGTGGAGCAGCTCCTCATT
AGTTTTGTGATGCTGGTGACATACCACAGTAAGCCACCTTCGATGCCCAA
TACCACGTCCGAGAGGTTGGTGGTAAACACCTTCAAGGGGGACGCTGTGC
AAAGGAACTGCAAGAAGCTATTTAGCTATGAGATCAGAGTCCCGGCCACT
CCGCCCACCTGCTTCAACCTGTGCGGCATCATCCAGATCGCCTACCAAGT
GGAGGTGGAGGCCAGGGTGAAGGTTGCCACAACAACGAGGTTGTCACCAT
TCCGCTGACCATTGGCAGTTTCCCTCTTGCACACACGTACCAATCCAGCC
TCGGGGTTTCGTCCCCAGCTGATGTATGAGCTGGCTTTTGAAGAGTAGCC
ACTGCTCCAAACTCTTCAAGTCCATGGGTCTGTCGACGCAATCATTCTTC
GCCCAACTATCAGGAGGCTGTTTCAATGGGCGCAGCCGCTGCTACGAGGT
CAAGCGACTTAACGGACCTGACCAGTACGGCCATATCCT
FMO12907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18745-RA | 1567 | CG18745-RA | 167..1299 | 9..1132 | 5105 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7784264..7784838 | 1047..479 | 2460 | 97.6 | Minus |
| 3R | 32079331 | 3R | 7784901..7785116 | 483..268 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 7785173..7785319 | 268..122 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 7785839..7785953 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:28:01 has no hits.
FMO12907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:32 Download gff for
FMO12907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18745-RA | 167..1249 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:55 Download gff for
FMO12907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18745-RA | 167..1249 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:13 Download gff for
FMO12907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18745-RA | 167..1249 | 9..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:13 Download gff for
FMO12907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7784264..7784837 | 480..1047 | 97 | <- | Minus |
| 3R | 7784905..7785116 | 268..479 | 100 | <- | Minus |
| 3R | 7785174..7785317 | 124..267 | 100 | <- | Minus |
| 3R | 7785839..7785953 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:55 Download gff for
FMO12907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3609986..3610559 | 480..1047 | 97 | <- | Minus |
| arm_3R | 3610627..3610838 | 268..479 | 100 | <- | Minus |
| arm_3R | 3610896..3611039 | 124..267 | 100 | <- | Minus |
| arm_3R | 3611561..3611675 | 9..123 | 100 | | Minus |
