FMO12909.5prime Sequence
1102 bp (967 high quality bases) assembled on 2013-01-29
> FMO12909.5prime
CAGTCGACATGAAGTTTTCCTACAAATTTTCCAACCTGTTGGGCACAATA
TATCGTAATGGAAACTTGGTGTTCACACCGGATGGCAATTCCGTTATCAG
TCCGGTTGGCAATAGGATAACGGTCTACGATTTAAAAAACAACAAATCGC
GCACCTTGTCCCTGGAATCGCGGTATAACTACACGAACATAGCTCTTTCC
CCGGATGGAAGTCTGCTCATCGCAGTCAATGAAAAGGGTGAGGCGCAGCT
CATCAGCATGATGTCCTGTACGGTGATACATCGTCACAAGTTCCAGACGG
GCGTACAGTGCATCTGCTTCAGTCCAAATGGAGCATTCTTTGCCGTCGCT
GTGCAGAACGTAGTGTTGATATTCTGTGCACCTGGTGAGATCACAGGGGA
GTACAATCCTTTCGTCCTGCGCCGAAGATTCCTAGGTGGATTCGACGATG
TCACTTGGCTGGACTGGTCTTCGGACTCTCGACTTTTGGCAATCGGCTGT
CGGGATAGCTCCACCAAAATCGTTGCCATCAACTATACAAAGAACTTCCG
CACCTATAACCTAAGTGGCCACACAGACGCCATTGTAGCTTGTTTTTTCG
AGGCAAACAGCTTGCACTTGAACACCATAAGCCGCAATGGTCAGCTCTGC
TTGTGGGAATGCAGCCTAGCTCCCTCGGATTTAGAGGATGCTGAAAGGCC
AAAAATCGCTCCCCCTCAAAGGAAGAAGGAAAAGAAGGCAGTATCTGACA
ATGAGTCAGAGATGACGTTGAAAATGTAGTGTAAAAGGATGCGTTGAAGG
AGGAATCTACCAAGGAAGCCGAGATGTCAACCATATAAAAATGAGACGAG
ACGAAGAGTCACCCCTTCTTTTACAAAAAATAACTCGTCATTACTTGGCC
GATGAGCGCGAAAGAACAGCGGATGTACACTGACCGCGGCAAACTACACA
CTCGTACCAAGGTTTGGTAGTAGCCTTCAATTCCGGAGCTTTCTAACTCT
ACAATTGCCGGACGTCACATTGATTTCATTCGCTTGAACATTCCGACTAT
CTAATTCGCGAGTCTCTCAACTGCACTGGGGACTGGGTTCCTGCTCCGAG
AG
FMO12909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12325-RB | 3410 | CG12325-RB | 296..1389 | 9..1088 | 4835 | 97.3 | Plus |
| CG12325-RA | 3220 | CG12325-RA | 106..1199 | 9..1088 | 4835 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10823939..10824828 | 140..1017 | 3775 | 98.1 | Plus |
| 2R | 25286936 | 2R | 10823771..10823883 | 27..139 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:28:15 has no hits.
FMO12909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:33 Download gff for
FMO12909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12325-RA | 94..1105 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:05 Download gff for
FMO12909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12325-RA | 99..1110 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:21 Download gff for
FMO12909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12325-RA | 99..1110 | 1..1002 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:21 Download gff for
FMO12909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10823771..10823883 | 27..139 | 100 | -> | Plus |
| 2R | 10823939..10824812 | 140..1002 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:05 Download gff for
FMO12909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6711276..6711388 | 27..139 | 100 | -> | Plus |
| arm_2R | 6711444..6712317 | 140..1002 | 98 | == | Plus |
