Clone FMO12916 Report

Search the DGRC for FMO12916

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:129
Well:16
Vector:pMK33-CFH-BD
Associated Gene/TranscriptLcp65Ad-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12916.5prime Sequence

350 bp (350 high quality bases) assembled on 2013-01-29

> FMO12916.5prime
CAATCCACATGAAATTCACTATTGCCATCGCCTTCTCCTGTATCCTTGCC
TGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAGGTGCTGCG
CTTCCACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGTGGAGACGA
GCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACGTGGGCACC
GATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTCGGTGACGA
TGGTCAGACCTACAACATTCAGTACCTGGCCGATGATAACGGCTTCCAGC
CCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGGCAAGCTTTCTAAACCAT

FMO12916.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RB 616 CG6955-RB 75..398 9..332 1560 98.8 Plus
Lcp65Ad-RA 521 CG6955-RA 75..398 9..332 1560 98.8 Plus
Lcp65Ac-RA 505 CG6956-RA 191..402 110..321 385 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6143883 140..332 935 99 Plus
3L 28110227 3L 6143469..6143599 9..139 625 98.5 Plus
3L 28110227 3L 6145111..6145290 142..321 315 78.3 Plus
Blast to na_te.dros performed on 2014-11-28 18:28:38 has no hits.

FMO12916.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:36 Download gff for FMO12916.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 59..390 1..336 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:19 Download gff for FMO12916.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 71..402 1..336 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:34 Download gff for FMO12916.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 71..402 1..336 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:34 Download gff for FMO12916.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6143465..6143599 1..139 95 -> Plus
3L 6143691..6143887 140..336 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:19 Download gff for FMO12916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136565..6136699 1..139 95 -> Plus
arm_3L 6136791..6136987 140..336 97   Plus