Clone FMO12925 Report

Search the DGRC for FMO12925

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:129
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSrp9-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12925.5prime Sequence

257 bp (257 high quality bases) assembled on 2013-01-29

> FMO12925.5prime
CAGTCGACATGGTTTTTGTAAAGAACTGGGATGATTTCGAGATTGCCGTC
GAGAACATGTACTTGGCCAATCCACAGAACTGTCGACTTACCATGAAATA
CGCGCACTCCAAGGGCCACATTCTGCTAAAAATGACGGACAACGTTAAGT
GTGTGCAGTACAAAGCGGAGAACATGCCGGATCTCAGAAAAATCGAGAAG
ATCACCAGCAACTTGGTGGGACACATGGCGTCCAAGGAAGCAAGCTTTCT
AGACCAT

FMO12925.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Srp9-RA 821 CG8268-RA 103..333 9..239 1155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7936475..7936615 9..149 705 100 Plus
3L 28110227 3L 7936679..7936770 148..239 460 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:32:52 has no hits.

FMO12925.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:18 Download gff for FMO12925.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 101..331 9..239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:31 Download gff for FMO12925.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..333 9..239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:27 Download gff for FMO12925.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..333 9..239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:27 Download gff for FMO12925.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7936475..7936615 9..149 100 -> Plus
3L 7936681..7936770 150..239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:31 Download gff for FMO12925.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7929575..7929715 9..149 100 -> Plus
arm_3L 7929781..7929870 150..239 100   Plus