FMO12930.5prime Sequence
1147 bp (1050 high quality bases) assembled on 2013-01-29
> FMO12930.5prime
CAGTCGACATGCCCAAAAGCGAGGCCGCCACAATGATAACCAACAATAAT
TTGGATTATGACCAGGCCAGCGCCAGCAGCACAATAATAGCAGGAGCTAC
ATCGACGACCGCGGGCACAGCGGCAACATCGGTGGCCATGAGCAACAGAA
ATGGCAGCACCAGCAGCAGCAGCAACTCCTCGCCCACGGCGGACAATTCC
AATTCCAATTCCAACTCGAATTCAAACGCAAATATAAATCGGAATTTGAA
TCAGAACCCCAACTCGAACTCCAATACAAACTCCAATTCGTATTTCAACC
GATTCGACAATCGCATAGCTGCCAACTTGGCTGCCGTTTTAACTGGCGCA
GGAGCCCGTTTTCGATCCTCCTCCTGCAGCAATCGCCATCCAGCTGGAGT
TGCAAATCCGGCCGTTTTGAGATCACCACTCGCCACAATAAGCCGCAAGA
CTAGTCTGGCCACGCCCCCTTCACCAGCGAGTCTAGGACGACGCCGCCCA
CTGCAACTCTTCACGCACGCGAATCTCAATTGCAATGACAACGAGAAGGT
GGCCCAAACACCAAGCTCCGATGAGGATAATTCGCCCACCGAACTAAACA
GCTGCAAGCGATTGGCAGACAAACCTCCTCTGGTCAAACGCTTGACAATG
GGCTTGCTGCGCCAAAACGAGGAGTCACGCCCATTGGTGGGCGACATGAC
TCCTTTGAGCGCGCCGCTGGACATCCAGCCGGTGTACTCGAATGGCTACA
TCAACGAGGACTCCTACATCGACAGCAAGTTCGGTGACTCGTGCCGCCAA
TCCTTGACAGCCATCCCGATGCTGGACAATGTTAACCTGAACGACAATAA
CGAGTTCAACCTGAAGAAGCGCTACTTAGGAGAAACGAGCAGCGCAATTC
CAGTCCGAAAATCTTTGCCAATCGCCTGCGGATGAACCAGGGTGCCGTTG
GCCAGCGATGCAGCAGTTGTCACGCATTCGGTATGTGGGATCCGATGAGG
AGGATCTCGAGCTGAGATGCTGCTGGTACAGGCGGGCATATTCAGGACAT
AGCCGTTGAAGTCTGCAAGCCAGAAGTCATGTGGCGTTTCTCGTGCGAAG
AGACACCTCAACAGATGCTATGCACTGACCCTGCCCGTACTGCACTG
FMO12930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PVRAP-RA | 2919 | CG32406-RA | 805..1951 | 9..1140 | 5135 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6019337..6019857 | 9..529 | 2605 | 100 | Plus |
| 3L | 28110227 | 3L | 6024630..6024892 | 632..894 | 1300 | 99.6 | Plus |
| 3L | 28110227 | 3L | 6020060..6020164 | 530..634 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 6025011..6025187 | 896..1063 | 480 | 92.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6821 | 73..176 | 215 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6917 | 68..176 | 211 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6863 | 68..179 | 203 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 70..176 | 188 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2546 | 68..208 | 178 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1241 | 89..270 | 169 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2859 | 62..179 | 147 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..3005 | 68..194 | 141 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2367 | 118..176 | 132 | 74.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2364 | 113..176 | 122 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6788 | 117..176 | 119 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 121..176 | 115 | 69.6 | Plus |
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 570..649 | 225..301 | 113 | 63.7 | Plus |
FMO12930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:20 Download gff for
FMO12930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32406-RA | 793..1948 | 1..1146 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:43 Download gff for
FMO12930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32406-RA | 799..1954 | 1..1146 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:39 Download gff for
FMO12930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PVRAP-RA | 799..1954 | 1..1146 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:39 Download gff for
FMO12930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6019331..6019857 | 1..529 | 99 | -> | Plus |
| 3L | 6020060..6020162 | 530..632 | 100 | -> | Plus |
| 3L | 6024631..6024892 | 633..894 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:43 Download gff for
FMO12930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6012431..6012957 | 1..529 | 99 | -> | Plus |
| arm_3L | 6013160..6013262 | 530..632 | 100 | -> | Plus |
| arm_3L | 6017731..6017992 | 633..894 | 99 | -> | Plus |
