FMO12933.5prime Sequence
1115 bp (990 high quality bases) assembled on 2013-01-29
> FMO12933.5prime
CAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCATCTACAAG
AAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTTGTGTTATG
TAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAAACGCATCG
AGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCGTTCAGAAT
GCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAACTTCCTCAC
AGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTTGAGGCATG
GCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGCGCCGCACT
AGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACCATTAGCAA
TCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGACGTGGACC
AGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTGATAGCAAG
CTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCCGCACTGGA
GCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCACTTGTCCT
TCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGGGCAAGTAC
TTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGTCGCGAGCA
TCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTCGGCCATTA
CGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGTTCGAGAAC
ACTAAGATCGTGAGCGCTTCCTCAACTACTGGCGCACCACAGGACACCAG
CGCATGGGATATCTGTATGGGACGTACGAGCAGCACACTGATGTTCCGTT
GGGCCATTCGGCCAAGGTGGCTGCCATTTATGAGCCGCCACAGAGTCTAT
CAAGGATTCGATCAATATTCACCCGATGATTCCCCGACCAATGTTGATGT
CCGTACCCAGGGCGCTGGAACGTAAAAAAAATTGTTGATTTTCCTTGATT
TTCTTACAGGAGCATGTCAGTATTGGTTCGTCCAACCAATTCCTGTATCC
AGTTTCCCCTTTTTA
FMO12933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npl4-RA | 2362 | CG4673-RA | 167..1178 | 9..1018 | 4755 | 98.4 | Plus |
| Npl4-RD | 2168 | CG4673-RD | 75..984 | 111..1018 | 4245 | 98.2 | Plus |
| Npl4-RB | 2208 | CG4673-RB | 75..984 | 111..1018 | 4245 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25622416..25622890 | 975..503 | 2170 | 98.1 | Minus |
| 3R | 32079331 | 3R | 25623172..25623406 | 344..110 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 25622950..25623109 | 504..345 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 25623478..25623579 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:35 has no hits.
FMO12933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:22 Download gff for
FMO12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4673-RA | 161..1150 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:00 Download gff for
FMO12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RA | 161..1150 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:51 Download gff for
FMO12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RA | 161..1150 | 1..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:51 Download gff for
FMO12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25622420..25622890 | 503..971 | 98 | <- | Minus |
| 3R | 25622952..25623109 | 345..502 | 100 | <- | Minus |
| 3R | 25623172..25623405 | 111..344 | 100 | <- | Minus |
| 3R | 25623478..25623585 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:00 Download gff for
FMO12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21448142..21448612 | 503..971 | 98 | <- | Minus |
| arm_3R | 21448674..21448831 | 345..502 | 100 | <- | Minus |
| arm_3R | 21448894..21449127 | 111..344 | 100 | <- | Minus |
| arm_3R | 21449200..21449307 | 1..110 | 96 | | Minus |
