FMO12934.5prime Sequence
1098 bp (1005 high quality bases) assembled on 2013-01-29
> FMO12934.5prime
CAGTCGACATGTCGAAAATGAGGGGTCGCATTCTGATCCCACTGCCCAAT
ACCGGAGCGATGGGTCGCAAGCGCAACAACTTCTACATGCGGAGTCTGTT
CCTGCTGGCCCTGGGCATTTTCGGTCTGCTCCAGTACAACAACTTCAATT
ATCTGGACTCGCGGGACAATGTGCTGGGCGACGCGGTGACCAACGACTCG
GACGACGCCATCCTGGCCATGGTGCCCGCCACCCTGCACAAGTATCTGAC
GCCCCACTCGCGCAATCACAGCGCCTCGGGAGCAGGAGCCCTCAACGGCG
CGGCCCTGCTCCTGAATGCCAGTAGTCCGGGCGCAGCTACTGCCAGCACC
ATCAGCTTCGACGTGTACCATCCTCCGAATATCACCGAGATCAAGCGCCA
GATCGTCAGGTACAACGACATGCAGATGGTGCTCAACGAGGACGTCTTTG
GACCGCTGCAGAACGACTCTGTGATAATCGTGGTCCAGGTGCACACGAGG
ATCACCTACCTGCGCCACCTGATCGTCAGCCTGGCGCAGGCCCGGGACAT
TTCGAAGGTGCTGCTGGTGTTCTCGCACGACTACTACGACGACGACATCA
ACGACCTGGTGCAGCAGATCGACTTCTGCAAGGTGATGCAGATCTTCTAC
CCGTACTCCATTCAGACGCATCCTAACGAGTATCCCGGCGTGGATCCCAA
CGACTGTCCGCGAAACATCAAAAAGGAGCAAGCTCTGATCACCAACTGCA
ACAATGCGATGTATCCCGATCTCTATGGCCACTATCGGGAGGCGAAGTTC
ACGCAGACGAAGCACCATTGGATCTGGAAGGCCACCGGGTGTTCACGAAC
TGGAGTGACCCGCTATCACACAGGACTGGTGCTGTTCCTCGAGAGACCAC
TACGTGACGAGGACTTCTGTACTTGCTGGCTATGATGCAGCACGCAACAA
AGACTGTGCCCCAGTGCACGTGCTGTCCCTGGCACCTATCTCAGACTTCA
CTACTACCGGTACCACAGCAGGACTACAAGAAATCCTATGCTTCCTCGCT
GATCTCCACAACAGTTTTAGATACTATGAATAACCATTAACCTGGCAA
FMO12934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat2-RA | 3331 | CG7921-RA | 642..1714 | 5..1061 | 4845 | 97.8 | Plus |
| Mgat2-RC | 3034 | CG7921-RC | 642..1672 | 5..1020 | 4690 | 98 | Plus |
| Mgat2-RB | 2672 | CG7921-RB | 343..1373 | 5..1020 | 4690 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30018691..30019118 | 730..303 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 30019182..30019331 | 303..154 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 30019389..30019518 | 153..24 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 30018487..30018633 | 874..731 | 585 | 98 | Minus |
| 3R | 32079331 | 3R | 30018298..30018431 | 993..869 | 195 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:33 has no hits.
FMO12934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:15 Download gff for
FMO12934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 676..1768 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:16 Download gff for
FMO12934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 639..1731 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:18 Download gff for
FMO12934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 639..1731 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:18 Download gff for
FMO12934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30018488..30018633 | 731..873 | 97 | <- | Minus |
| 3R | 30018691..30019117 | 304..730 | 100 | <- | Minus |
| 3R | 30019182..30019331 | 154..303 | 100 | <- | Minus |
| 3R | 30019389..30019517 | 25..153 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:16 Download gff for
FMO12934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25844210..25844355 | 731..873 | 97 | <- | Minus |
| arm_3R | 25844413..25844839 | 304..730 | 100 | <- | Minus |
| arm_3R | 25844904..25845053 | 154..303 | 100 | <- | Minus |
| arm_3R | 25845111..25845239 | 25..153 | 100 | <- | Minus |
