FMO12935.5prime Sequence
1081 bp (980 high quality bases) assembled on 2013-01-29
> FMO12935.5prime
CAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTGAAACCAAA
AGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAGGAGTACAA
GCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTTTCTGATGG
CGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACCTCAACAAG
CTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTGGCCGCCAA
TCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTGGGGCAACA
AGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTCTATTCACG
CTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGACAATGTGAA
GTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTCGGCGAATA
TTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCAGCGAACGC
ACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGATTCATCAT
TGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCAGGGACACG
TCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCATCCGGATGG
ATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTGCCCGGAGT
GTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGATGCAGGGCG
GCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCTATTTATCC
GCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCACTTTGTGCTG
TTGGAGACTCTGGGCACATCCCTGACAATGGATATGTTCGCTTGGTCCAA
CGACGAGGCCCTATGGTACATGGGCATCATGATGACACCGCAGCTATTGT
CTCCCTTGGTTACGTTCGTTTTGATTGAGCCATTGTGCCAGAATTATACC
GAGCGGTTATGTGCTTCATCTGGGGCGGAATTCTCGCTGAAGGTTTCCTC
GATCCGTGCTCTTCTGTCTGGGTCGGAATCG
FMO12935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-RC | 2114 | CG8596-RC | 380..1432 | 9..1064 | 4935 | 98.4 | Plus |
| CG8596-RB | 1821 | CG8596-RB | 87..1139 | 9..1064 | 4935 | 98.4 | Plus |
| CG8596-RA | 1875 | CG8596-RA | 141..1193 | 9..1064 | 4935 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7343103..7343612 | 708..199 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 7343668..7343859 | 200..9 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 7342892..7343045 | 858..706 | 720 | 99.4 | Minus |
| 3L | 28110227 | 3L | 7342654..7342832 | 1040..859 | 530 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:39 has no hits.
FMO12935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:16 Download gff for
FMO12935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 139..1180 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:20 Download gff for
FMO12935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 141..1182 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:22 Download gff for
FMO12935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 141..1182 | 9..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:22 Download gff for
FMO12935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7342642..7342832 | 859..1054 | 92 | <- | Minus |
| 3L | 7342892..7343043 | 708..858 | 99 | <- | Minus |
| 3L | 7343104..7343610 | 201..707 | 100 | <- | Minus |
| 3L | 7343668..7343859 | 9..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:20 Download gff for
FMO12935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7335992..7336143 | 708..858 | 99 | <- | Minus |
| arm_3L | 7335742..7335932 | 859..1054 | 92 | <- | Minus |
| arm_3L | 7336204..7336710 | 201..707 | 100 | <- | Minus |
| arm_3L | 7336768..7336959 | 9..200 | 100 | | Minus |
