Clone FMO12937 Report

Search the DGRC for FMO12937

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:129
Well:37
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17660-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12937.5prime Sequence

1156 bp (1038 high quality bases) assembled on 2013-01-29

> FMO12937.5prime
CAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGTTGGCCTTG
CTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGCATGGTGGA
CGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCGTCCGCTGC
TGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTTCCAATGTG
GAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCCTGCATCTT
TGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCTGCAGAAGA
ACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACATATCCCTGC
AACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTCGAAGGATC
AGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCACAAGCACC
CACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGGATGGCATT
TACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAGTTCAGTGC
CGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTCGGCCATAG
ATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTTACGTGATA
TTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGGGATCTTTT
GAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAATGCTAGAGA
AGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGGGGTGTTGC
AGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCGAAGCGCA
CGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGGCATTGTC
AAACCCCGTTTGGACCCATGCTGCATCGCGTGTGGGCGTGGGAACCCTCT
ACTTTGTGCTGGACCTGCGTGGAGAGCTACCTTGCGTATCACCAATGTGA
AGACCGATCGCAGCCGAGCTGCTGGTGGCGAGCATTTCCACTGGCCGGTG
CTGGACACAGGGAATATGCTGGTGGGAATTTCACTCCGCTTCGGGCGAAC
ACTGCACTCTCCCGACTGGAGGAGAATAATGGTTCAAGCTTCTACTCTGT
TGACAG

FMO12937.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 102..1230 4..1140 5140 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1708821..1709105 902..617 1380 99.7 Minus
2L 23513712 2L 1709617..1709812 458..263 980 100 Minus
2L 23513712 2L 1709174..1709333 617..458 800 100 Minus
2L 23513712 2L 1710207..1710320 117..4 555 99.1 Minus
2L 23513712 2L 1708509..1708667 1075..912 475 95.8 Minus
2L 23513712 2L 1709878..1709963 263..178 430 100 Minus
2L 23513712 2L 1710038..1710104 182..116 320 98.5 Minus
Blast to na_te.dros performed on 2014-11-28 18:33:53 has no hits.

FMO12937.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:24 Download gff for FMO12937.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 92..1176 1..1090 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:12 Download gff for FMO12937.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 98..1182 1..1090 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:03 Download gff for FMO12937.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 98..1182 1..1090 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:03 Download gff for FMO12937.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1710208..1710321 1..116 97   Minus
2L 1708495..1708677 903..1090 93 <- Minus
2L 1708821..1709104 618..902 99 <- Minus
2L 1709174..1709332 459..617 100 <- Minus
2L 1709617..1709811 264..458 100 <- Minus
2L 1709878..1709963 178..263 100 <- Minus
2L 1710043..1710103 117..177 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:12 Download gff for FMO12937.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1709617..1709811 264..458 100 <- Minus
arm_2L 1709878..1709963 178..263 100 <- Minus
arm_2L 1710043..1710103 117..177 100 <- Minus
arm_2L 1710208..1710321 1..116 97   Minus
arm_2L 1708495..1708677 903..1090 93 <- Minus
arm_2L 1708821..1709104 618..902 99 <- Minus
arm_2L 1709174..1709332 459..617 100 <- Minus