FMO12937.5prime Sequence
1156 bp (1038 high quality bases) assembled on 2013-01-29
> FMO12937.5prime
CAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGTTGGCCTTG
CTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGCATGGTGGA
CGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCGTCCGCTGC
TGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTTCCAATGTG
GAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCCTGCATCTT
TGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCTGCAGAAGA
ACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACATATCCCTGC
AACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTCGAAGGATC
AGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCACAAGCACC
CACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGGATGGCATT
TACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAGTTCAGTGC
CGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTCGGCCATAG
ATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTTACGTGATA
TTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGGGATCTTTT
GAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAATGCTAGAGA
AGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGGGGTGTTGC
AGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCGAAGCGCA
CGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGGCATTGTC
AAACCCCGTTTGGACCCATGCTGCATCGCGTGTGGGCGTGGGAACCCTCT
ACTTTGTGCTGGACCTGCGTGGAGAGCTACCTTGCGTATCACCAATGTGA
AGACCGATCGCAGCCGAGCTGCTGGTGGCGAGCATTTCCACTGGCCGGTG
CTGGACACAGGGAATATGCTGGTGGGAATTTCACTCCGCTTCGGGCGAAC
ACTGCACTCTCCCGACTGGAGGAGAATAATGGTTCAAGCTTCTACTCTGT
TGACAG
FMO12937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-RA | 2357 | CG17660-RA | 102..1230 | 4..1140 | 5140 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1708821..1709105 | 902..617 | 1380 | 99.7 | Minus |
2L | 23513712 | 2L | 1709617..1709812 | 458..263 | 980 | 100 | Minus |
2L | 23513712 | 2L | 1709174..1709333 | 617..458 | 800 | 100 | Minus |
2L | 23513712 | 2L | 1710207..1710320 | 117..4 | 555 | 99.1 | Minus |
2L | 23513712 | 2L | 1708509..1708667 | 1075..912 | 475 | 95.8 | Minus |
2L | 23513712 | 2L | 1709878..1709963 | 263..178 | 430 | 100 | Minus |
2L | 23513712 | 2L | 1710038..1710104 | 182..116 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:53 has no hits.
FMO12937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:24 Download gff for
FMO12937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 92..1176 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:12 Download gff for
FMO12937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 98..1182 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:03 Download gff for
FMO12937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 98..1182 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:03 Download gff for
FMO12937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710208..1710321 | 1..116 | 97 | | Minus |
2L | 1708495..1708677 | 903..1090 | 93 | <- | Minus |
2L | 1708821..1709104 | 618..902 | 99 | <- | Minus |
2L | 1709174..1709332 | 459..617 | 100 | <- | Minus |
2L | 1709617..1709811 | 264..458 | 100 | <- | Minus |
2L | 1709878..1709963 | 178..263 | 100 | <- | Minus |
2L | 1710043..1710103 | 117..177 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:12 Download gff for
FMO12937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1709617..1709811 | 264..458 | 100 | <- | Minus |
arm_2L | 1709878..1709963 | 178..263 | 100 | <- | Minus |
arm_2L | 1710043..1710103 | 117..177 | 100 | <- | Minus |
arm_2L | 1710208..1710321 | 1..116 | 97 | | Minus |
arm_2L | 1708495..1708677 | 903..1090 | 93 | <- | Minus |
arm_2L | 1708821..1709104 | 618..902 | 99 | <- | Minus |
arm_2L | 1709174..1709332 | 459..617 | 100 | <- | Minus |