FMO12940.5prime Sequence
1129 bp (1024 high quality bases) assembled on 2013-01-29
> FMO12940.5prime
CAGTCGACATGGATATTGAATTACCTTATCTTGCTGAGTATGCAAGAACT
GGACGAGCCACTTGCAAAGGATGTAAAAGTACTATATCTAAAGATACTCT
TCGGATTGCTGTCATGGTTCAATCTGCATTTCATGATGCCAAAGTTCCGA
ATTGGTTTCATAAAACCTGCTTTTTTAAAAACCAGCGTCCCAGCTCAGTA
GGAGACATACAAAACATTGGAAATCTCCGATTTGCCGATCAAAAGGAATT
AACGGATCTTGTGGAAAATATACAAGAAGTTATAAGCGCACAATTAGGAA
AAAAGCGATCGAAGGCTTTTAACTTAGCATTAAAAGACTTTGGGATTGAA
TATGCAAAATCTAGTCGATCGACGTGTCGTGGATGTGAACAAAAAATAAA
CAAGGATCTAGTTCGCTTACGTAAAACTGTTTATGATACTGAAGTTGGTA
TGAAGTACGGAGGCCAACCTTTGTGGCATCATTTGGAATGCTTCGCCCAA
TTGCGCTCTGAGCTTGGCTGGTTTGCGTCAGGTGAAGATATGCCAGGATT
TCAGAGCTTAGCAGATGATGATCAAGCGAAAGTTAAAAACGCCATACCAC
CAATAAAATCTGAAGAACTACCAGATACAAAAAGAGCTAAGATGGAATTA
TCAGATACAAATGAAGAAGGAGAAAAGAAACAACGCTTAAAAGATCAAAA
TGATGCCTACTTCAGGTTTCGCGATGACATTAAAAATAAAATGAAGAAGA
AAGACATTGATATACTTCTAAAGTTTAATAATCAACAACCTGTAACTGGT
GACACAGAAAAGTTATTTGATCAAACTGCCGATTTACTGACATTCGGAGC
TATTGAATCATGTTCTGAATGCAACAGCTGTCAGTTTATTGTAATAAATC
TGGATATATATGTAATGGAAATCATTCTGAGTGACCAAATGTAACAAGCT
GCTAAAGAGTCACAGATCGGCATGCATAGTGCAAAAGACTTAAAGCATTA
TATAATTTTTGAATACGGGAAAGAATTCCATCTACACGGATCTTAATACT
CTTCCAATAAAAGTACTTTTCTAGAGTCTTTGAACGATAAAACAAATGAT
GTTTTGTTAGTCACAATATCTCGGAGTTC
FMO12940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Parp-RB | 3112 | CG40411-RB | 76..1214 | 9..1123 | 5030 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 3523492..3523947 | 1044..599 | 1775 | 96.7 | Minus |
| 3R | 32079331 | 3R | 3584980..3585314 | 598..264 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 3585369..3585510 | 264..123 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 3586866..3586979 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 6486..6623 | 570..705 | 126 | 58.6 | Plus |
| invader6 | 4885 | invader6 INVADER6 4885bp | 1079..1162 | 339..419 | 115 | 63.1 | Plus |
FMO12940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:25 Download gff for
FMO12940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 72..1215 | 3..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:18 Download gff for
FMO12940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 72..1215 | 3..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:08 Download gff for
FMO12940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 71..1214 | 3..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:08 Download gff for
FMO12940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 3523414..3523947 | 599..1110 | 94 | <- | Minus |
| 3R | 3584980..3585313 | 265..598 | 100 | <- | Minus |
| 3R | 3585369..3585510 | 123..264 | 100 | <- | Minus |
| 3R | 3586866..3586984 | 3..122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:18 Download gff for
FMO12940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 1936750..1936891 | 123..264 | 100 | -> | Plus |
| 3RHet | 1935276..1935394 | 3..122 | 97 | -> | Plus |
| 3RHet | 1936947..1937280 | 265..598 | 100 | -> | Plus |
| 3RHet | 1964215..1964748 | 599..1110 | 94 | | Plus |
