FMO12942.5prime Sequence
959 bp (957 high quality bases) assembled on 2013-01-29
> FMO12942.5prime
CAGTCGACATGAACTTCAATCCGGCCAGCGTGGTAGCCGCCGCAGCAGCA
GCCGCACATCAGACGACCCATCTTCACCACCATCACCATCATCATCCGTA
TTTAAGCCATCACCAGAGCAGCATCACCCAACCACAAGGACAGCAACAAC
AGCTGATCCCACTGCCTGTCGGCGGAGGAGGCGGAAGTTTACCAGTGGGT
GGCAGTGGCGGTGGCGATACATCGCCCAAGATCATGGAGTGGACCAACGA
CGATGCTCTGGAGCTGATTGAGCAGTATCGCTGCCATACAGAGCTATGGA
ATCGTGCCGATCCCAAGTACAAGGATAAACTATGTCGATTCCGGGCATGG
TCGGAAATAGCCGAGCGTTTCGGTTGTAGCAAGGCGGAAGTGGAGCGGAA
GATGAACGTACTGCTCACACAGTATCGCCGGGAGAAGCACAAGATGTTCG
TGAAGATATACCAGGGCATACAGCCCAATCCGTCCAAATGGTATGCCTTC
AAGCGATTCGATTTCATGGAGGCGGGCGGCGGCAGCCTGAGCGGCGGTGG
GTCCGTGGGATCCGGTGTTAATGCCGCCAGCGGAAACCTGGTGCCGAATC
CCGTTTCCTCATCCGCTGCCGCTGCCGCCCACAACGGGCTAAACGGACTG
GCTGCCGCGGCAGCGGCCTACGAAAGCGGTACGATTGCGGCGGCGGGCAA
CGGAGGAGCACCACCCACTGTACCAGGTGGCGGAGCACCTGACTCACAGA
CCGTCATGCAGCACAGACGCATCAAGACCAAAGAGCTGAAATATTTCGGA
GCGATGGGCCTGAACATACCCATGTTGATAGCGAGCAGCCAGACGCTGGA
CAGTGGAATACGGCGGGTCAGTACTCGCACGATATCGGGATCCGGCGGCG
GTGGATCGAGCGAGGAGAAGTGCTGGAGGCGGCGGATGCCGCCACAGCAA
CTGCGAGTA
FMO12942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 413..1369 | 9..959 | 4620 | 99.3 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 675..1631 | 9..959 | 4620 | 99.3 | Plus |
| CG5953-RA | 3534 | CG5953-RA | 413..1369 | 9..959 | 4620 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16527390..16528184 | 803..9 | 3960 | 99.9 | Minus |
| 2L | 23513712 | 2L | 16511285..16511447 | 959..803 | 535 | 95.7 | Minus |
Blast to na_te.dros performed 2014-11-28 18:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7161..7209 | 105..153 | 109 | 74 | Plus |
FMO12942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:26 Download gff for
FMO12942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 405..1368 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:28 Download gff for
FMO12942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 405..1368 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:16 Download gff for
FMO12942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 405..1368 | 1..958 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:16 Download gff for
FMO12942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16511286..16511446 | 804..958 | 96 | <- | Minus |
| 2L | 16527390..16528192 | 1..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:28 Download gff for
FMO12942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16511286..16511446 | 804..958 | 96 | <- | Minus |
| arm_2L | 16527390..16528192 | 1..803 | 99 | | Minus |
