FMO12943.5prime Sequence
761 bp (761 high quality bases) assembled on 2013-01-29
> FMO12943.5prime
CAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGAAGTCTCGA
CTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAGAAGGCCAA
GGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCCCAACGCCT
CCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCGATTATTGT
CGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAAATGGAGTA
TAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGTCTGCAAGA
CGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGATCTATTGC
GCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAGTGCAATAA
GGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTGGCATCGCG
AGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCCAGCGATTC
ACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGCGAGCTCTT
TGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCATTGGCGGCA
CACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACTGCTTTGTG
TGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATCACCGACGG
ACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGATGGCAAGCT
TTCTAGACCAT
FMO12943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RI | 1814 | CG32171-RI | 183..918 | 8..743 | 3680 | 100 | Plus |
| Lmpt-RE | 1832 | CG42679-RE | 201..936 | 8..743 | 3680 | 100 | Plus |
| Lmpt-RA | 1810 | CG42679-RA | 179..914 | 8..743 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16919479..16919703 | 8..232 | 1125 | 100 | Plus |
| 3L | 28110227 | 3L | 16921178..16921367 | 400..589 | 950 | 100 | Plus |
| 3L | 28110227 | 3L | 16920879..16921053 | 229..403 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 16921430..16921591 | 582..743 | 795 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:22 has no hits.
FMO12943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:27 Download gff for
FMO12943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RA | 173..918 | 1..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:32 Download gff for
FMO12943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RA | 173..918 | 1..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:19 Download gff for
FMO12943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RA | 173..918 | 1..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:19 Download gff for
FMO12943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16919473..16919702 | 1..231 | 98 | -> | Plus |
| 3L | 16920882..16921051 | 232..401 | 100 | -> | Plus |
| 3L | 16921180..16921366 | 402..588 | 100 | -> | Plus |
| 3L | 16921437..16921595 | 589..748 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:32 Download gff for
FMO12943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16912573..16912802 | 1..231 | 98 | -> | Plus |
| arm_3L | 16913982..16914151 | 232..401 | 100 | -> | Plus |
| arm_3L | 16914280..16914466 | 402..588 | 100 | -> | Plus |
| arm_3L | 16914537..16914695 | 589..748 | 98 | | Plus |
