FMO12944.5prime Sequence
1127 bp (1022 high quality bases) assembled on 2013-01-29
> FMO12944.5prime
CAGCGACATGTCTTCGCCGGCGGCGCAGAGCAACAGCAGCAGCAGCCAGT
CGCAGTCCGCAGCCCAGCAGCAGCAGCAGCAGAATCAAAAGGCCAATGTC
AACAACACACACGACAACAAGAATGCCGCGGCGACGACGGGGACAGCGGC
GGGATCGGGATCAGGCGGAGCGGCAGGCTCGGCGGGCACACAGCAGCAGG
GTCAGGGCGGCACTGGAACCTCGAGCGGTCCATCCAGCCCAACCAAGCGC
AGCACAATATCGACAAAGGAGCGTGTGATCGACAGCGTGGCATTTCCGCC
GAGCCGTAAACTCACCTGCGCGGATGTGTTCGACGCGCGGACCGGAAAGC
CGCAGCACGATGTCCTCAAGCAGCACTTCATCCTGGAGGGCAGGATCGAG
GAGAGCGCCGCCCTGCGCATTATCCAAGAGGGCGCCACGCTATTGCGCAC
GGAAAAGACGATGATCGACATCGAGGCGCCGGTGACGGTGTGCGGCGATA
TCCATGGCCAGTTCTACGATCTGATGAAGCTATTCGAGATTGGGGGCTCG
CCGGCGACCACCAAGTATCTGTTCCTGGGCGACTACGTCGATCGGGGCTA
CTTCAGCATCGAGTGCGTACTGTATTTGTGGTCGCTAAAGATCACCTATC
CGCAGACGCTGTTCCTGCTGCGCGGCAACCACGAGTGCCGGCACTTAACC
GAGTACTTCACCTTCAAGCAGGAGTGCAAGATCAAGTACTCGGAGCGCGT
GTACGACGCCTGCATGGACGCATTCGACTGCCTGCCGCTGGCGGCGCTCA
TGAACCAGCAGTTCCTCTGCGTGCACGGCGGTCTGTCGCCGGAGATACAC
GAGCTGGAGGACATCCGACGGCTCGACCGCTTCAAGGAGCCTCCCGCCTT
TGGCCCATGTGCGACCTGCTGTGTCCGATCCGCTGGAGGACTTCGGCAAC
GAGAAAGACTCGGACTTTCTACACGCCCAACTCCGTGGGGCGGCTGTTCG
TACTTCTACAGCTACGCCGCCTGCTGGGACTTCTTGGAGAACAACAACCT
GCTGGGTCGATTATCCGGGCGCACCGAGGGCTAAGACGCCTGGCTACGGC
ATGTACCGAAAAGCAACACCGGGCTCC
FMO12944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-RD | 4007 | CG9819-RD | 291..1395 | 7..1114 | 5130 | 98 | Plus |
| CanA-14F-RC | 7965 | CG9819-RC | 618..1722 | 7..1114 | 5130 | 98 | Plus |
| CanA-14F-RB | 6837 | CG9819-RB | 483..1587 | 7..1114 | 5130 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16566966..16568031 | 1074..7 | 4950 | 98.6 | Minus |
| X | 23542271 | X | 16558367..16559173 | 1074..266 | 2620 | 89.6 | Minus |
| 3R | 32079331 | 3R | 31042283..31042398 | 731..846 | 310 | 84.5 | Plus |
| 3R | 32079331 | 3R | 31041633..31041875 | 371..613 | 300 | 74.9 | Plus |
| 3R | 32079331 | 3R | 31041962..31042080 | 612..730 | 205 | 78.2 | Plus |
| 3R | 32079331 | 3R | 12425404..12425529 | 598..473 | 195 | 77 | Minus |
| 2L | 23513712 | 2L | 7830510..7830633 | 479..602 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:29 has no hits.
FMO12944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:27 Download gff for
FMO12944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RA | 445..1535 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:36 Download gff for
FMO12944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 479..1569 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:23 Download gff for
FMO12944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 479..1569 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:23 Download gff for
FMO12944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16566987..16568035 | 1..1051 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:36 Download gff for
FMO12944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16461020..16462068 | 1..1051 | 98 | | Minus |
