FMO12945.5prime Sequence
1061 bp (992 high quality bases) assembled on 2013-01-29
> FMO12945.5prime
CAGTCGACATGGACTACGAACGCTCGCTGCGTGATCGCCGCCAAAACGAC
AACGAGTACCGACAATTCCTCGAGTTCCGCGAAAAGCTGCCCATTGCAGC
GATGCGGTCGGAAATTTTAACCGCAATTAATGACAATCCAGTGGTAATCA
TTCGTGGAAACACAGGGTGCGGAAAGACTACCCAGATTGCCCAATACATT
CTTGATGACTACATCTGCTCCGGCCAGGGCGGGTACGCTAATATTTATGT
GACCCAGCCTCGTCGCATTTCAGCCATTTCTGTGGCCGAGCGCGTAGCTC
GCGAGCGGTGCGAGCAATTGGGCGACACTGTAGGCTACTCGGTGCGATTT
GAGTCTGTGTTTCCACGACCCTACGGCGCAATCCTCTTTTGCACCGTGGG
TGTGTTGCTGCGCAAGCTGGAGGCTGGCTTACGAGGAGTGTCGCATATTA
TTGTGGACGAAATCCACGAGAGAGACGTGAACAGCGACTTTTTGCTGGTC
ATCCTTCGCGACATGGTCGACACATATCCGGACCTGCATGTTATTCTTAT
GTCGGCCACTATTGATACAACGAAATTTTCCAAATATTTTGGCATCTGTC
CCGTATTGGAAGTACCCGGAAGAGCATTTCCCGTGCAGCAATTTTTCTTG
GAGGACATTATTCAGATGACAGACTTTGTGCCTTCGGCGGAGTCGCGCCG
AAAGCGCAAGGAAGTGGAGGACGAGGAGCAATTGCTTTCCGAGGACAAGG
ACGAGGCGGAAATCAACTATAACAAGGTGTGCGAGGACAAGTATTCACAA
AAGACTCGAAATGCTATGGCCATGCTATCCGAATCGGACGTTAGCTTTGA
GCTGCTGGAGGCATTATTGATGCATATTAGTCAAAATATTCCCGGTGCTA
TCTTAGTATCCTGCCCGGTTGGACTGATCTTGCGCTTATGAGTTCTGCAA
ATACAACATTTTGGTGATACATCCCATTACCAATTTGGCGGGCACTCGCA
GATTCACGAAAACGAGCACGCTAAGGTTTCAGCCTGTTCCGAAAGGCGAC
CAGATATATCC
FMO12945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mle-RC | 4023 | CG11680-RC | 880..1936 | 9..1048 | 4710 | 97.5 | Plus |
| mle-RA | 4062 | CG11680-RA | 1156..2212 | 9..1048 | 4710 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5977987..5978518 | 540..9 | 2660 | 100 | Minus |
| 2R | 25286936 | 2R | 5977082..5977469 | 923..540 | 1775 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:39 has no hits.
FMO12945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:28 Download gff for
FMO12945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RB | 1260..2301 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:43 Download gff for
FMO12945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1150..2191 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:29 Download gff for
FMO12945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mle-RA | 1150..2191 | 1..1029 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:29 Download gff for
FMO12945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5976965..5977468 | 541..1029 | 95 | <- | Minus |
| 2R | 5977987..5978524 | 1..540 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:43 Download gff for
FMO12945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1864470..1864973 | 541..1029 | 95 | <- | Minus |
| arm_2R | 1865492..1866029 | 1..540 | 99 | | Minus |
