FMO12947.5prime Sequence
1099 bp (1002 high quality bases) assembled on 2013-01-29
> FMO12947.5prime
CAGTCGACATGGTTGGCAAAGTCTTGGGCATCAAAGACTTGGAGCAGTTC
AGTAGCCGGCGCAGCAGCGTCTACGTCGATCCCGAGTGCGACAAGTTCTT
CGAGCTGCCGCTCTTCATCGCGGCCAGCTCGAACGACATCACCACCAAAT
GCCAGTGCTTCCAGTTCAGTCCAGGCAAGGAACCGGCACTGCGCTCCTAC
ACGGAAATCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGACGTGAAGAA
CATACTCAGGGAGAACTCGTGGCCCATTAACTCCCCGATCCGAGCCCAGC
TATGGCCGATGTTGTGTGGCCAGCACCAGACCAAACAGCAAATGCTAGAT
GGCTTCTACTGGGAGATGGTTCACCAGGTCTTTGGCACCACGGAGCTGTC
GGAGAAGCCGATCATGCTGCCCGCCTTTGTGGATGCCACCCACTGTTTGC
CCTACCACTTGACCAGCACGGGACGAGCCGTGGCCGATCGCATCGTGAAT
GTCCTGGGCTACGACTGCCCCGATATTACCTACAGTCCAGTATTGTATCC
CATTACATCGATACTTTTGCATTTCATGTCGGAGGAGGAGGCGTACATAT
GTCTGGCCGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCAATCAAACC
AAACTACAGCACGAAGTCACTTGGAAGACGGTGATGCAGATAGCCAAAAA
GCACACAAAAAGTGCTACTTCGTATTTCCAACGTATTTGCCCGGGCCTGA
AGCTAGAACGCATCTTCATGGACTGGTGCTGGTGGATTCTAGCCGGTCTA
CCCTTCCAGCATCTGGTGCGGATCATGGACTGCTACTTCCACGAGGGCAT
CAAGGTCCTGTACCGCGTGGCCCTCGTCATACTCAACCTGTTTCACAAGG
AGTGCCAGTCGAACAACGAATGGAGTCCAGACACCATTAAAACGACATTG
GCAACGCTTGATCAGTCTGCAGAAGATACCATGTCGCCGGCGAAGTTGCT
CCATGCGCGTAGATAAGGGAACTGAATACCCGTTAATTCTAGAAATTAGC
CAGACTGAAATGCACTAAAAGCGCTCCTGGCCCCCAGCGTCGAGCATTT
FMO12947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sky-RI | 4658 | CG9339-RI | 523..1599 | 9..1070 | 4900 | 97.9 | Plus |
| sky-RF | 3041 | CG9339-RF | 566..1642 | 9..1070 | 4900 | 97.9 | Plus |
| sky-RC | 4758 | CG9339-RC | 566..1642 | 9..1070 | 4900 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20877173..20877477 | 1006..708 | 1215 | 97 | Minus |
| 2L | 23513712 | 2L | 20881987..20882194 | 582..375 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882467 | 379..172 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20885281..20885454 | 182..9 | 840 | 98.9 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 707..582 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:41 has no hits.
FMO12947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:22 Download gff for
FMO12947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-RC | 564..1649 | 9..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:04 Download gff for
FMO12947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RC | 566..1651 | 9..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:56 Download gff for
FMO12947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RC | 566..1651 | 9..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:56 Download gff for
FMO12947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20885289..20885454 | 9..174 | 100 | | Minus |
| 2L | 20882262..20882464 | 175..377 | 100 | <- | Minus |
| 2L | 20877553..20877677 | 583..707 | 100 | <- | Minus |
| 2L | 20881987..20882191 | 378..582 | 100 | <- | Minus |
| 2L | 20877165..20877477 | 708..1011 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:04 Download gff for
FMO12947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20877553..20877677 | 583..707 | 100 | <- | Minus |
| arm_2L | 20877165..20877477 | 708..1011 | 96 | <- | Minus |
| arm_2L | 20881987..20882191 | 378..582 | 100 | <- | Minus |
| arm_2L | 20882262..20882464 | 175..377 | 100 | <- | Minus |
| arm_2L | 20885289..20885454 | 9..174 | 100 | | Minus |
