FMO12950.5prime Sequence
635 bp (635 high quality bases) assembled on 2013-01-29
> FMO12950.5prime
CAGTCGACATGGCGCCGACCACGACGATTGAGACCATCACAATCACGAGG
CCGCTGAAGGTGATTGCATTTATCTGCGGCGTCATCGTGGTGGCCCTCAT
GATTATGGCTCTGGCGTCCACAGATTGGTTAATGGCCTCAGACTGGCGGC
AAGGTCTCTTTGTGCACTGCATCGAGGATGATTCGGTGCCGCCGCTGCCA
TTCAATATCCAGGATCCGCCAGGATGCTACTGGACCCGCGATGTCGGCTA
CATTAAGGCCACAGCCGCTCTGTGCATCATCACGCTGATAACGGACGTCA
TTGCCACAGTACTGACAGGTCTGGGCCTCCGGACGCAGAATCATAATCTA
AAGTATAAGTTCTATCGTATAGCAGTATTGGTGATGCTTGTATCCTTGCT
GGCCGTATTGTCCGCCTTGATCGTATATCCAGTATGCTTTGCCGGCGAAC
TAACCATGGCCAATCGACGAGTCTGGGAATTTGGCTGGGCCTATGGCGTC
GGCTGGGGTGCGGCCATCTTTCTATTTGGGGCCGTTGTCCTGCTGCTCTG
CGACAAGGAGTCGGAGGAGATCTACTATAAGGAAAGGAAAATCGTACATG
AAAACCAAATGCGCGCCGCAAGCTTTCTAGACCAT
FMO12950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45049-RF | 1516 | CG45049-RF | 136..744 | 9..617 | 3045 | 100 | Plus |
| CG45049-RE | 3417 | CG45049-RE | 551..1159 | 9..617 | 3045 | 100 | Plus |
| CG45049-RC | 3708 | CG45049-RC | 842..1450 | 9..617 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22729351..22729540 | 58..247 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 22729946..22730104 | 459..617 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 22729609..22729759 | 246..396 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 22729817..22729879 | 397..459 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 22729234..22729286 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:58 has no hits.
FMO12950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:30 Download gff for
FMO12950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17618-RC | 835..1453 | 2..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:56 Download gff for
FMO12950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17618-RC | 837..1455 | 2..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:39 Download gff for
FMO12950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45049-RC | 837..1455 | 2..623 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:39 Download gff for
FMO12950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22729229..22729284 | 2..59 | 93 | -> | Plus |
| 3R | 22729353..22729539 | 60..246 | 100 | -> | Plus |
| 3R | 22729610..22729759 | 247..396 | 100 | -> | Plus |
| 3R | 22729817..22729879 | 397..459 | 100 | -> | Plus |
| 3R | 22729947..22730109 | 460..623 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:56 Download gff for
FMO12950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18554951..18555006 | 2..59 | 93 | -> | Plus |
| arm_3R | 18555075..18555261 | 60..246 | 100 | -> | Plus |
| arm_3R | 18555332..18555481 | 247..396 | 100 | -> | Plus |
| arm_3R | 18555539..18555601 | 397..459 | 100 | -> | Plus |
| arm_3R | 18555669..18555831 | 460..623 | 98 | | Plus |
