FMO12951.5prime Sequence
963 bp (927 high quality bases) assembled on 2013-01-29
> FMO12951.5prime
CAGTCCACATGCCCGAGTACATGTTGTGCCGAATCTGCTTGACAGAGGAC
ATCAACTCGGAGGCGATGGCGCCCCTGTTCGATGACAACGACGCCCAGTG
CCGGGAGCTGGTGCGCAAGATTGAAGAAGTGGGCAGCATAAAGCTGGTGC
CGCTGCAGAACATCCCCAGTATGTTGTGCTACAGCTGCGTGGAGCGACTG
ACCAGTGCCCACAAGTTCCGGGAGCTTTGCCAGGAGAGCGAGCGCACATT
TGCCACCAATGTAGTCAAGGCCGAGATGAAGTCGGAGCCAACGGACGAGG
TGCCGCACGTAGTGGCTGACAACATTGAGTACATCTACGAATCGGCCAAC
GACTTCATCGACGGTGTCGAGGATGACATCGGAATGGAGAACATCATGGA
GGAGCCCCTGGAGGATGGTGTCGGGGAAACGTCGCAGGCCTATGAGACTA
GCACTGTAGTGGACGACCTGGACGAGGATGACTTGCTGGTGCCGAATAGC
ACCGATAGCGACTACCAGCCCATCGAGCGCTGCCGCAAAGCTAAGGTGCG
TAAAACGCGGATGACTAAACGTGGACGTGGCCGACCTCGCGGTGCTAGCT
CCGGACACCCACGCAGTTTTAGCGAGGAGCGTCCCCCCTGTTCAAGCTAG
CTTCAAATCATCCTCCCGAAGTATCCTCCACGAACATTATGTGCGAAATC
TGCGGCAATATCTACTCCCAAGCGAGCCGCTCTCAACATTCATATGCGTC
GTCATATGGCCGAGAAACCATTTAAATGCGAAATATGCAGCAAATCCCTT
CGCGGGTCCATCCGAGCTAAATCGTCATATCCGCGTTCACACGGGCGAGA
AACCATTCTTTGTGTAAATATTGCAACCGCTCCGTTCGCAGATCGCAGCT
CCATATCGTCATGAAAGAACACACACAACCAGTGACCTTTCACTTGCTCC
CCTGGCGGCAAGG
FMO12951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14711-RA | 1319 | CG14711-RA | 73..1024 | 9..963 | 4415 | 98 | Plus |
| CG6808-RA | 3138 | CG6808-RA | 508..1163 | 917..268 | 2875 | 96.5 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 1402..1536 | 143..9 | 675 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 1220..1348 | 270..142 | 645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11623784..11624294 | 268..781 | 2390 | 99 | Plus |
| 3R | 32079331 | 3R | 11623411..11623545 | 9..143 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 11623599..11623727 | 142..270 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 11624357..11624475 | 782..903 | 415 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:04 has no hits.
FMO12951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:31 Download gff for
FMO12951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 38..989 | 9..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:00 Download gff for
FMO12951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 73..1024 | 9..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:43 Download gff for
FMO12951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 73..1024 | 9..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:43 Download gff for
FMO12951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11623411..11623545 | 9..143 | 100 | -> | Plus |
| 3R | 11623601..11623726 | 144..269 | 100 | -> | Plus |
| 3R | 11623786..11624294 | 270..781 | 99 | -> | Plus |
| 3R | 11624357..11624491 | 782..917 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:00 Download gff for
FMO12951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7449133..7449267 | 9..143 | 100 | -> | Plus |
| arm_3R | 7449323..7449448 | 144..269 | 100 | -> | Plus |
| arm_3R | 7449508..7450016 | 270..781 | 99 | -> | Plus |
| arm_3R | 7450079..7450213 | 782..917 | 94 | -> | Plus |
