FMO12952.5prime Sequence
990 bp (961 high quality bases) assembled on 2013-01-29
> FMO12952.5prime
CAGTCGACATGTTCAAGCTAGTTTTTAAGCAGTACAAGTGCAAAAGTACC
AGTCCTGATTTAACGGAAGTTGTTAAGATCGATGATTGTGTAGTCAAGGG
GAATGATCAAGAAAAGAGTGATAATAATATTGTTCAACGATTAAGTATCA
GCAATGTAGAAAGCCTACAGACAATGCCAGGCGTTAAATCGCCAAAAGAT
TGGCGAACCTATACATTAACTAACCATCCCGGCATTATTGTGATTCGGAA
TCCATTCTCGGAACGAGGCCGGCGTTATTGGAGCGCCCGATGTCTGCGGG
ATTTTCCGCGAACGCCAAATATAGTCAATTTAAATGAAAGGCTCTTCGAT
GAATCCGTCAGGTCGGACTGGTGGAAACAGCTTAATCTGTGCAGCGATGG
CGTTGAGTTCCAACGTATAAAATCCGCGATGCGTTGGACGACATTTGGAT
ATCATCACAACTGGGACACGAAGATCTATGATGAGGAGATGCAGTCGCCG
TTTCCCGAAGATTTGAGCAGTCTATGCGGATTGTTTGCGCAAGCGTTGGG
ATACGCGGATTTTAAGCCAGAAGCCGCAATTGTAAATTACTATCCAGTTG
GTAGTACGTTATCGGGTCACACAGATCACTCTGAACCAAACAAATCGGCC
CCTTTGTTTTCTTTTAGTTTTGGTCAGACTGCAATATTTCTAATTGGTGG
AAGATCTTTAGAAGAAAAGCCAACCGCTATCTACCTTCAATCCGGGGACG
TTATGATAATGTCCGGAGAATCGCGTCTATGCTATCACGCAGTTCCTCGT
ATCATCAAACTCAAGCTTCCGCGACTTTATCACTGATAATTGAAGATGTC
GATAATGCAGTATTAAAACGCGTACATTGATAAAGATTATTTCATGATGT
TGGCAACCTCATTTTGGGAGCCTTTTTCGAGATATATGGACGATTCACGA
TTAATATTAATATACGTCCAGGTTTCATCCCAGGAGATGT
FMO12952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AlkB-RA | 1133 | CG33250-RA | 70..1059 | 8..990 | 4685 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15858600..15859141 | 667..126 | 2710 | 100 | Minus |
| X | 23542271 | X | 15858208..15858539 | 990..666 | 1225 | 95.5 | Minus |
| X | 23542271 | X | 15859193..15859310 | 125..8 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:09 has no hits.
FMO12952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:31 Download gff for
FMO12952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlkB-RA | 178..1167 | 8..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:05 Download gff for
FMO12952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlkB-RA | 70..1059 | 8..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:46 Download gff for
FMO12952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlkB-RA | 70..1059 | 8..990 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:46 Download gff for
FMO12952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15858208..15858537 | 668..990 | 96 | <- | Minus |
| X | 15858600..15859141 | 126..667 | 100 | <- | Minus |
| X | 15859193..15859310 | 8..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:05 Download gff for
FMO12952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15752241..15752570 | 668..990 | 96 | <- | Minus |
| arm_X | 15752633..15753174 | 126..667 | 100 | <- | Minus |
| arm_X | 15753226..15753343 | 8..125 | 100 | | Minus |
