FMO12953.5prime Sequence
716 bp (716 high quality bases) assembled on 2013-01-29
> FMO12953.5prime
CAGTCGACATGATTACGATTAAATGTAAAGACACCAATCTGGACCCGCTT
CCGGTCAAGATTGGTATTATTGGCGGTTCGGGGCTTGACGACCCAGATAT
CCTGGAACAGCGGCAGGAACGTGTGGTGGAGACGCCCTACGGAGAACCGT
CTGATGCATTGATTGAAGGCGAGATCAATGGAGTACAGTGCGTACTCCTG
GCGCGTCATGGACGCAAGCACGACATCATGCCCTCCAATGTTAACTACCG
GGCCAACATCTGGGCTCTACGCGATGTGGGCTGCACCCACTTAATTGTCT
CCACGGCATGTGGATCGTTGCGCGAGGAAATCAAGCCGGGCAACCTGGTT
GTTCCACACGACTTTATCGACAGGACTACTAAACGCCTTCAGACCTTCTA
CGATGGCAAGGCACAAAGTCCACGTGGTGTTTGCCACCTGTTTATGTTTC
CGGCATTCAGCGAACGCACCCGCAACATTCTGCTTCAGGCGGCCAAGGAG
CTGGAGATTCCCGCCCACGATAAGGCCACCATTGTGACTATTGAGGGTCC
GCGCTTCTCCTCTCGCTCGGAGAGCCACATGTTCCGTCAGTGGGGCGGGG
ACCTCATAAACATGACCACGTGTCCAGAAGTGGTGCTAGCCAAGGAGGCT
GGCCTACTCTACGGGTCGGTGGCCATTGCCACGGACTACGACTGCTGGCA
CATGGGTTGCGAGGGT
FMO12953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtap-RC | 1392 | CG4802-RC | 248..956 | 8..716 | 3470 | 99.3 | Plus |
| Mtap-RB | 1234 | CG4802-RB | 90..798 | 8..716 | 3470 | 99.3 | Plus |
| Mtap-RA | 1234 | CG4802-RA | 90..798 | 8..716 | 3470 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17428162..17428820 | 58..716 | 3220 | 99.2 | Plus |
| 2R | 25286936 | 2R | 17428042..17428093 | 8..59 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:15 has no hits.
FMO12953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:32 Download gff for
FMO12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4802-RA | 315..1031 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:08 Download gff for
FMO12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4802-RA | 82..798 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:50 Download gff for
FMO12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtap-RA | 82..798 | 1..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:50 Download gff for
FMO12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17428034..17428093 | 1..59 | 93 | -> | Plus |
| 2R | 17428164..17428820 | 60..716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:08 Download gff for
FMO12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13315539..13315598 | 1..59 | 93 | -> | Plus |
| arm_2R | 13315669..13316325 | 60..716 | 99 | | Plus |
