FMO12954.5prime Sequence
1146 bp (1029 high quality bases) assembled on 2013-01-29
> FMO12954.5prime
CAGTCGACATGACCACGCCTGTGCCCCGCCGCACCAAGGACATGATGGCA
CTGGGACTGGACTCCGACTCCGAGGACGACTTTAACACGCCATACCGACC
ACGACAAGCGGCGGCGGGAGAACGAAAACAGCAGCCGGTGGCGTCTTTCC
AAGTCCAAACGAGGGGCAAGGAGAACGAACCGCATCCCCTGCCCATAAAT
ATGCTACCTCGCCGAGTGTCCGAGTTGACTATGATGGATTCGGACAGTGA
CGAGGAGGACATCAAGAGCAATCACAACCTTAACTGCGCCATCCTAAACG
ATTCCTTTGTGCTGAGCCCATCCCAAGAGTTAACAAACAGCAACAGCAAC
ATAACCACTCGTAGAACACCAAGTGCCGCCCCCCTTAAGCAATCCGATTC
GAATCTCTCGTTCCTGGGAAGATTCAACGACATGGGCATCAATTGCAGCA
GTCAAGGATCCCCTGTTGCGAATTCGGAAAAACAGGTGGCCAAAAAGACA
GCACCCACGCTTCAAGCTGCACCAAGTGCCACCGAAAGGCGCCCACTCCA
AGAGACAGAGACGCCACTGCGTAATGAATTACCCTCCACCTCGAAGACGA
AGCCGGATGCAGACTTCATTACCCCCCAAGTACGAACAATTGGTTCCACA
CTGGCGGGAAAAAGTCGGAGTGCGGTGTCCAATGACTTCCGTGCGCAGAA
AGTGCTCTTCCAAACACCTATGACCGTGAGTCGTGCTGCTCCAGTGGCCT
CCGATAGCATAAGCTTCTCCCTGTGCGACACCATCACAGAAAGCCCGGAC
ATTCCGGAGCCTCCGAAAAAGGCAGACCACCAAAGAGTCAGCATCCTTCC
AAAAGTCCCTAGATCATGTTTTCCGGGAGTCGGACAGGATAACGTGCCAG
ACAAAGTGGATATGTGGAACCAAAGGAGCTGGTATCGATTCCCGCAGTTG
CTGTACCTCCAGAGCAGCTTCCCACAGGACATCTAATATTTTAAAAATCA
GATCATGAGTATACGATGATAAGAACCTGGCTGTGCGCTCAGCTCTGTTT
TTTGCACGCCGATCGGATTCGATGATCCGCCTGGAAGGTGGTGATCTGCA
GCCGATCCAAATGGGTGCAAGAAACTAACGAACTAACTCGGCAAGC
FMO12954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ald-RB | 2141 | CG7643-RB | 101..1222 | 9..1109 | 5040 | 97.7 | Plus |
| ald-RA | 2113 | CG7643-RA | 101..1222 | 9..1109 | 5040 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17671850..17672682 | 206..1030 | 3755 | 98.7 | Plus |
| 3R | 32079331 | 3R | 17671371..17671567 | 9..205 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:21 has no hits.
FMO12954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:33 Download gff for
FMO12954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 74..1153 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:12 Download gff for
FMO12954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 101..1180 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:53 Download gff for
FMO12954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ald-RA | 101..1180 | 9..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:53 Download gff for
FMO12954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17671371..17671567 | 9..205 | 100 | -> | Plus |
| 3R | 17671850..17672728 | 206..1070 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:12 Download gff for
FMO12954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13497093..13497289 | 9..205 | 100 | -> | Plus |
| arm_3R | 13497572..13498450 | 206..1070 | 98 | <- | Plus |
