FMO12956.5prime Sequence
962 bp (962 high quality bases) assembled on 2013-01-29
> FMO12956.5prime
CAGTCGACATGTCACTAGCCGGAGTCCTGACCTTTCAGCAGGCCATATCT
GGAGCTGTGTCACCACAGTATGGCACAGTGGGATCGCTAAATTCCCAGGT
ACCCGCTACCGGTGAAGCCGGAAAGCCGGGAATTGTGGGATCCGATGGCA
TTGGCGGTGGCGGTGGCGGTTTACCTGGCGGATCTTCACACAACTTAAAT
TTGACGGTGGGCCTGGGGTTTCTCGGTGGTTCCAGCACCACTTTGGCTGC
TGTCGCCGAGGTGACTAGTGGACCGGATGGCAATGGCGACTCCACCGACT
CCCCATCTCCGGTCTCCATGATTCCCAGCAATCAGCAAAAGCAGCAGCAG
CAACTGTTGCAGTTGCAACTGCAGCAGGAGCAACAGCATCTGCCCACCCA
TTTGCCCATGAAGCGGGAACGAGGCGTAGGCGAGTCCTCGGGGGCCAGCA
CATCCGGCACCGCCATCGCCGAACTGGCCTCCTCCGTCGTCCTGGCCACC
CAGTCCGGCAAGCCGATGACGGAGCGACAACGCTTAAGGACATCCAGCAT
GCCGGCGGAGAGTAGAAGGCCCCGCCTGGCGGAGATGCGACGTTCGGCCA
TCCATGCCGGTGATCCGGACATGACCTACTACCGTCTGCGAAGCTTCAGC
ATCACCTCCCATGGCATCTGCAATTTGGGCGATTCCCTGAGAAGCCGCAG
GTCACGTTCGATCAACTCCGTGACTTCCACCGGCACCTCAAACAGCGGCG
TGTATCGACACAATAGCAACGCATCGGGGCATCGGGCGAAGTCATCGACG
GGGATCCCAATGTTCCAGCCTACAAAATTGCCATGCTCGGCGCCTCCGGA
GTGGCAAGACCACACTGACTTACCAGTTCACCACTTCCGATTACATATGC
GCCTACGACCTGAGTCTTCGATGATGACCTACGGACAGAAAACGGTGTCT
GTGCTGGGTCGA
FMO12956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42541-RF | 8763 | CG42541-RF | 3267..4216 | 8..957 | 4615 | 99.3 | Plus |
| CG42541-RE | 9704 | CG42541-RE | 3321..4270 | 8..957 | 4615 | 99.3 | Plus |
| CG42541-RD | 8817 | CG42541-RD | 3321..4270 | 8..957 | 4615 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3904029..3904590 | 569..8 | 2810 | 100 | Minus |
| X | 23542271 | X | 3901110..3901265 | 917..764 | 680 | 98.7 | Minus |
| X | 23542271 | X | 3901931..3902053 | 691..569 | 615 | 100 | Minus |
| X | 23542271 | X | 3901786..3901862 | 766..690 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:27 has no hits.
FMO12956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:33 Download gff for
FMO12956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42541-RC | 2203..3160 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:17 Download gff for
FMO12956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42541-RD | 3316..4273 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:56 Download gff for
FMO12956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42541-RD | 3316..4273 | 1..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:56 Download gff for
FMO12956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3901108..3901262 | 767..920 | 98 | <- | Minus |
| X | 3901786..3901857 | 695..766 | 98 | <- | Minus |
| X | 3901927..3902052 | 570..694 | 97 | <- | Minus |
| X | 3904029..3904594 | 1..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:17 Download gff for
FMO12956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3795141..3795295 | 767..920 | 98 | <- | Minus |
| arm_X | 3795819..3795890 | 695..766 | 98 | <- | Minus |
| arm_X | 3795960..3796085 | 570..694 | 97 | <- | Minus |
| arm_X | 3798062..3798627 | 1..569 | 99 | | Minus |
