FMO12958.5prime Sequence
884 bp (884 high quality bases) assembled on 2013-01-29
> FMO12958.5prime
CAGTCGACATGCCCGTTGATCCCATGGATGACATCGAACTGCGCTCCGTG
CAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGCGAACA
GCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACAGGGCG
ATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCAACTAC
GCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGTCTGCT
GGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGAGGGTG
CACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATCTGGCC
GCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTGATTGG
TTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCTCTCTCGCCC
ATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCACGCAG
TCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTCTTGCG
CACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCACCACT
TCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGTACAAG
CAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTGATCAA
CGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTCCGCCAGGTA
CTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGATCAAT
ATCACAAGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTCAATGG
CCGTCTAGATCCTACAAACTCATCGTGATGAAGA
FMO12958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RC | 2193 | CG15669-RC | 899..1776 | 8..884 | 4320 | 99.5 | Plus |
| MESK2-RI | 2798 | CG15669-RI | 483..1360 | 8..884 | 4320 | 99.5 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 872..1749 | 8..884 | 4320 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511961 | 320..877 | 2745 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21510870..21511060 | 8..198 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 199..319 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:46 has no hits.
FMO12958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:29 Download gff for
FMO12958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RE | 880..1759 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:46 Download gff for
FMO12958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RE | 869..1748 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:32 Download gff for
FMO12958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RE | 869..1748 | 1..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:32 Download gff for
FMO12958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21510861..21511060 | 1..198 | 98 | -> | Plus |
| 2R | 21511123..21511243 | 199..319 | 100 | -> | Plus |
| 2R | 21511404..21511968 | 320..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:46 Download gff for
FMO12958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17398366..17398565 | 1..198 | 98 | -> | Plus |
| arm_2R | 17398628..17398748 | 199..319 | 100 | -> | Plus |
| arm_2R | 17398909..17399473 | 320..883 | 99 | | Plus |
