FMO12961.5prime Sequence
954 bp (952 high quality bases) assembled on 2013-01-29
> FMO12961.5prime
CAGTCGACATGACGAAGGACCAGCAGGCGACACCCATTCCCGAGGAGTTG
TACAATCTCACCCAGCTGGCCGAGGTTACTCTGTCCGTTGGTCCTCTGGT
CACGGACGAGGTGAAGCCACTGCCACTGTACGCCTCCTCGGACGACGACT
CCAACTACTACAGCCACAAGGTCTTCGATCGCAGGAAACTGCGTCGTTGC
ACAATCTCCGACTCGAATTCCTGCGCCAGCAGCAGTTCCAGTTCCACCTC
CAGCCGTCAATCCTCGGAGGACCACCTGGGACTCCAGGGGCACTCATCGG
TGCACCACCATCATGGGGAGCAGGGCGAAATCCTCAACAGCACTTCGTTG
CTGGAGGACGAGCACATCTGTCCCGAGTGCGGAAAGAAATACTCCACATC
CTCCAACCTAGCACGTCATAGACAAACGCACAGATCAATCATGGTTAAGA
AAGCGCGTCACTGTCCTTATTGCGAGAAGGTGTACGTTTCGATGCCCGCC
TACTCGATGCATGTGCGCACCCACAATCAGGGATGCGAGTGTCAGTTCTG
CGGCAAGCGCTTCTCAAGGCCCTGGCTCCTCCAGGGCCACATCCGCACCC
ACACAGGCGAAAAGCCCTTCAAGTGCGGCGTCTGCGAGAAGGCGTTCGCC
GACAAGAGCAACCTGCGCGCCCACATCCAGACCCACTCGAACACCAAGCC
ACACACATGTGCGCGATGCGGCAAAGGCCCTTCGCTCTCAAGTCCTACCT
GTACAAGCACGAGGAGTCATCGTGCATGAAGAATCGAGGAGGCGTTCCGG
GATCGGGAGCAGCATCCGGCAACCGACCTCCCTCGTCGCCAAAAAGGCAA
CAGGCGGAGTAACAAGCGGCACCATCTCGGCATTGGCTCCTGATCACCTG
CCGCGGCAGTGTGTGCTGCCTCCGATTCAACCCAGTCTACGCTAGCCAAC
AAGC
FMO12961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kah-RA | 2825 | CG17181-RA | 337..1282 | 9..954 | 4580 | 99.2 | Plus |
| sna-RA | 1668 | CG3956-RA | 1041..1161 | 506..626 | 215 | 78.5 | Plus |
| CG12605-RE | 2770 | CG12605-RE | 2273..2415 | 547..689 | 205 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 584479..584958 | 911..432 | 2215 | 98.8 | Minus |
| 3L | 28110227 | 3L | 585017..585441 | 433..9 | 2125 | 100 | Minus |
| 2L | 23513712 | 2L | 15477100..15477220 | 626..506 | 215 | 78.5 | Minus |
| 3L | 28110227 | 3L | 3958746..3958888 | 689..547 | 205 | 76.2 | Minus |
| 2L | 23513712 | 2L | 15424066..15424153 | 621..534 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:45 has no hits.
FMO12961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:36 Download gff for
FMO12961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17181-RA | 328..1280 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:29 Download gff for
FMO12961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17181-RA | 330..1282 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:07 Download gff for
FMO12961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kah-RA | 330..1282 | 1..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:07 Download gff for
FMO12961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 584367..584409 | 912..954 | 93 | <- | Minus |
| 3L | 584479..584956 | 434..911 | 98 | <- | Minus |
| 3L | 585017..585445 | 1..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:29 Download gff for
FMO12961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 584367..584409 | 912..954 | 93 | <- | Minus |
| arm_3L | 584479..584956 | 434..911 | 98 | <- | Minus |
| arm_3L | 585017..585445 | 1..433 | 99 | | Minus |
