FMO12966.5prime Sequence
1136 bp (1026 high quality bases) assembled on 2013-01-29
> FMO12966.5prime
CAGTCGACATGACACACGAAGGAAGTAACGATTTTGTGGTGCTCACCGAC
GTGGTGCGCAAGCAATATGTGCTCTATTTGGAGCGCCAGCTGCAGGAGAA
TGTCTGCGCCTGGGCCAACCAATCCCGTAATCGCCACAAGCCCACAGCCT
GGGCGTGCATTCCCGCGAGCTTGGAGCAACTGGAGAACAAGGCGAAGAAG
GCTTCCATGGCGGCACAGATCTACCAAAGAGCCATGGTCAAAACGATAGC
TGCGGTACGTAGGAACACTCAGGAATGCCGTTTGGCCAACATTCTATTTG
AACAAATGCAGCATGCAGCTGGAGAGGATGCTGTGCCCGTAAAAACAGAC
CACCGTCTGGTGGATAAGGCCACACAAACAACCGTCATAGAAGCCCAGAA
TGGCCACATAACTCCTACGGAGGACTACGATGATGATAGCTATGAGCTGC
GTAGAAAAATCGATATGTTTCAGGCTAGTCTCGAACGGTCGGAAGTTCAG
AACGAAACGCATTGCCCACATTGCCGTAGTAAGATCATGACCCCAGAGAA
TAAGCCCCTAGCCAATCAAGAATCTCTCTACTCCGAAACCGAAGATGCTG
TGGCCCAGGAGTTGGCCATGTTGTTTGGAGAAGAGCCTACTGATCTTAAT
CATATATTCGGCATCGAACCAACTGCTGTTACTGACGATCCGCAGATCTC
GGCCATACTAAAGGAAATAGCGAATGCGGAACTACCTGAAAAAATTGAGC
ATCCACCCACATCCCCAACCGCCACACCACCAACTGGGCATCACAGCGAG
GTGGATCTTCGCCAGAGTCGCTGGGCTTGCGAACTCTACGCCCAGAGGAG
GCGTCTCAATGCCTGTTTAGTTCGCTTACTGGAAGCGGATTGGCGGTGCG
AGGACCGCTTGAGATATAAGTTCACCTGATTTTTGGCGAAGACAGCGATG
ATGAGTTCGCAAACAGTATCCAGCCCGTCAATTGATTTAGTGGACGAGTT
CTGCTGGCCAGCTGCTGCTTCGTATTCCGCCATGGATTGTACGTCATTGA
TGTCTTCCCCCTGGAGAGGACCTATTCGCCAATCGAATTTCTGTTCCAGA
AGCCTAGCCAGATGCTGGGCGCACTTCAATGCATGG
FMO12966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11983-RB | 1664 | CG11983-RB | 117..1248 | 9..1136 | 5210 | 98 | Plus |
| CG11983-RA | 1813 | CG11983-RA | 266..1397 | 9..1136 | 5210 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9008963..9009825 | 245..1103 | 3765 | 97.8 | Plus |
| 3R | 32079331 | 3R | 9008713..9008905 | 53..245 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 9008586..9008632 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:02 has no hits.
FMO12966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:38 Download gff for
FMO12966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11983-RA | 152..1221 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:41 Download gff for
FMO12966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11983-RA | 266..1335 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:16 Download gff for
FMO12966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11983-RA | 266..1335 | 9..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:16 Download gff for
FMO12966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9008586..9008630 | 9..53 | 100 | -> | Plus |
| 3R | 9008714..9008905 | 54..245 | 100 | -> | Plus |
| 3R | 9008964..9009796 | 246..1073 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:41 Download gff for
FMO12966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4834308..4834352 | 9..53 | 100 | -> | Plus |
| arm_3R | 4834436..4834627 | 54..245 | 100 | -> | Plus |
| arm_3R | 4834686..4835518 | 246..1073 | 98 | | Plus |
