FMO12968.5prime Sequence
845 bp (845 high quality bases) assembled on 2013-01-29
> FMO12968.5prime
CAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCTCCGCCCAG
CGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAGATGACCGT
GCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCGCGACGACC
GCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTGCTTACAAG
GTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTCATCGACAC
GCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGCTGCCATGG
CCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCTCCATGCAG
GCCATCGATCACGCAAAGATACTCGATTGCGCCAAGCCGCCAGTCGGTGA
TCGCCCTCTGCCAATAAGCCTCATAATTGAAAGTCCACGCTCAACTTGGC
TGAATGAGATCAACGACATCCTGCACAGAGATCGAGTCGGCGAGGTGATT
GCGCCGCCGCTGGACAAGAGCAAGTCGGACAAGATGGAGGCGGCCCGCCT
CATCGTCATTCGGCGGCGCAAGATGAAGAAGCACAAGCTAAAGAAGCTGC
GTCGCAAGATGAAGTTCGAGTGGGCCAAGGTGCGCCAGCGCCGCGAGATG
CGCAAAGAGAAGGCCTTCCAAGCAAAGCTGATATCCCAGATCAAGCAGGC
GGAGGCATTCAGTGCGGAGCAGCACGTGGCGGAGATCCTGCGGCAGGCCA
ACGAGACGCCGCTGCCGCGTTTCTGGAAAGGACGCCGCCTGCCGGCATTT
ATCATTAAGCAGAAACTAGGCATTAAGGCAAGCTTTCTAGACCAT
FMO12968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RB | 1025 | CG11876-RB | 154..972 | 9..827 | 4080 | 99.9 | Plus |
| CG11876-RC | 991 | CG11876-RC | 120..938 | 9..827 | 4080 | 99.9 | Plus |
| CG11876-RD | 1386 | CG11876-RD | 51..404 | 9..362 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29114429..29114893 | 363..827 | 2310 | 99.8 | Plus |
| 3R | 32079331 | 3R | 29113258..29113451 | 9..202 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 29113992..29114156 | 199..363 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:17 has no hits.
FMO12968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:39 Download gff for
FMO12968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 110..943 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:52 Download gff for
FMO12968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 110..943 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:27 Download gff for
FMO12968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 110..943 | 1..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:27 Download gff for
FMO12968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29113248..29113449 | 1..200 | 98 | -> | Plus |
| 3R | 29113994..29114155 | 201..362 | 100 | -> | Plus |
| 3R | 29114429..29114898 | 363..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:52 Download gff for
FMO12968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24938970..24939171 | 1..200 | 98 | -> | Plus |
| arm_3R | 24939716..24939877 | 201..362 | 100 | -> | Plus |
| arm_3R | 24940151..24940620 | 363..832 | 99 | | Plus |
