FMO12969.5prime Sequence
994 bp (978 high quality bases) assembled on 2013-01-29
> FMO12969.5prime
CAGTCGACATGGAGTGCTGTTTATCGGAGGAGGCCAAGGAACAAAAGCGC
ATCAATCAGGAAATCGAGAAGCAGTTGCGCCGGGACAAGAGAGATGCGCG
CCGCGAGCTTAAACTGCTACTACTGGGCACTGGCGAGTCCGGGAAGTCCA
CATTCATCAAACAGATGCGTATTATCCACGGCAGCGGTTACTCGGACGAG
GACAAGCGTGGGTACATCAAGCTGGTTTTTCAGAACATATTCATGGCCAT
GCAGTCAATGATCAAGGCCATGGATATGCTGAAGATTTCCTACGGCCAGG
GAGAGCATAGTGAACTGGCCGATCTGGTGATGAGCATCGATTATGAGACC
GTTACCACGTTCGAGGATCCATACTTGAATGCCATCAAAACGCTTTGGGA
CGATGCTGGCATCCAGGAGTGCTATGATCGTCGTAGGGAATATCAGCTGA
CTGATTCAGCCAAATACTACTTGAGCGATCTAGCTCGAATTGAACAGGCT
GATTACTTGCCAACCGAGCAGGATATTCTGCGTGCTCGAGTGCCGACAAC
TGGCATTCTTGAGTATCCATTCGATTTGGATGGCATTGTGTTTAGAATGG
TAGACGTCGGTGGTCAGCGATCCGAGAGAAGAAAGTGGATTCATTGCTTT
GAGAATGTGACATCAATTATATTTTTGGTAGCGCTATCGGAGTACGATCA
AATCTTGTTTGAATCTGATAATGAGAATCGAATGGAGGAATCTAAAGCTT
TATTTCGTACTATAATTACATACCCTTGGTTTCAAATTCGTCAGTTATTC
TTTTCCTGAATAAGAAGGACTTGTTGGAAGAGAAAATAATGTATTCGCAT
TTGGTAGACTATTTTCCTGAATACGATGGTCCAAACAGGATCCACGCTGC
GGCCAACAGTTCGTTCTGAAAAGTACTTGCCTGCAATCCAGATCCCGAAC
GTCAATGCTATTCGCATTTCACAATCGGCCACAGAATAACCGGA
FMO12969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphaq-RD | 1615 | CG17759-RD | 433..1413 | 8..985 | 4740 | 99.3 | Plus |
| CG45086-RB | 3050 | CG45086-RB | 1314..2189 | 8..882 | 3710 | 95 | Plus |
| CG45086-RA | 3017 | CG45086-RA | 1281..2156 | 8..882 | 3710 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12616539..12616725 | 126..312 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 12623908..12624087 | 133..312 | 870 | 98.9 | Plus |
| 2R | 25286936 | 2R | 12616787..12616941 | 312..466 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 12617985..12618142 | 724..880 | 740 | 99.4 | Plus |
| 2R | 25286936 | 2R | 12624149..12624294 | 312..457 | 700 | 98.6 | Plus |
| 2R | 25286936 | 2R | 12617793..12617924 | 594..725 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 12617456..12617584 | 467..595 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 12616296..12616415 | 8..127 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 12627238..12627383 | 313..458 | 460 | 87.7 | Plus |
| 2R | 25286936 | 2R | 12624752..12624909 | 724..880 | 335 | 82.3 | Plus |
| 2R | 25286936 | 2R | 12627785..12627915 | 594..724 | 295 | 81.7 | Plus |
| 2R | 25286936 | 2R | 12618218..12618302 | 893..974 | 275 | 96.5 | Plus |
| 2R | 25286936 | 2R | 12627969..12628126 | 724..880 | 275 | 79.7 | Plus |
| 2R | 25286936 | 2R | 12624378..12624445 | 481..548 | 235 | 89.7 | Plus |
| 2R | 25286936 | 2R | 12624582..12624667 | 615..700 | 205 | 82.6 | Plus |
Blast to na_te.dros performed 2014-11-28 18:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 1496..1585 | 865..780 | 117 | 61.1 | Minus |
FMO12969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:40 Download gff for
FMO12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galpha49B-RD | 424..1417 | 1..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:56 Download gff for
FMO12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaq-RD | 425..1418 | 1..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:30 Download gff for
FMO12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaq-RD | 425..1418 | 1..993 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:30 Download gff for
FMO12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12616288..12616414 | 1..126 | 96 | -> | Plus |
| 2R | 12616540..12616724 | 127..311 | 100 | -> | Plus |
| 2R | 12616787..12616941 | 312..466 | 100 | -> | Plus |
| 2R | 12617456..12617584 | 467..595 | 100 | -> | Plus |
| 2R | 12617795..12617924 | 596..725 | 100 | -> | Plus |
| 2R | 12617987..12618140 | 726..878 | 99 | -> | Plus |
| 2R | 12618204..12618311 | 879..984 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:56 Download gff for
FMO12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8503793..8503919 | 1..126 | 96 | -> | Plus |
| arm_2R | 8504045..8504229 | 127..311 | 100 | -> | Plus |
| arm_2R | 8504292..8504446 | 312..466 | 100 | -> | Plus |
| arm_2R | 8504961..8505089 | 467..595 | 100 | -> | Plus |
| arm_2R | 8505300..8505429 | 596..725 | 100 | -> | Plus |
| arm_2R | 8505492..8505645 | 726..878 | 99 | -> | Plus |
| arm_2R | 8505709..8505816 | 879..984 | 94 | | Plus |
