FMO12971.5prime Sequence
1123 bp (1001 high quality bases) assembled on 2013-01-29
> FMO12971.5prime
CAGTCGACATGCTCATAAACCTTAAGGTGAAGACCTTAGATGCGCGCATC
CACGAATTCAGCATCGACAATGAGCTCACCATCCGCCAGTTCAAGGACCA
AATAGCCGAGAAGACTAACATTGCGGCGGAAAACCAGCGTATCATCTACC
AGGGTCGCGTTCTGGTCGATGATAAGCAGGTGAAGGAATATGATGTGGAT
GGCAAGGTGCTCCATGTGGCCGAACGACCACCATTCTCGCAGCGCGGAGC
CAATGCCCGCAACAATGATGAACCCATGCGAACCTTCCGCAATGTGGCAC
GTCCGCCGCCGCCCGGAATGCGTACTTCTCCGTACTTCCGCGCCCTCGAT
GGAATGCTGGTGGGCACCATGGCCATACCGGTGAACAATGGTCCAGTAGC
TGGGACACGTCCTCCACCGAATCGTTATCCCAACTCGTCGTCCTTCTGCA
TTAACCGCATCACGGTCGCCCTGCACATGATCGATTGCGCTGACAATATA
GCAGCTTATCTGGAAAATCCTGCCGTTGGCCTGAACAATCAATCACTGGA
CATTCTGCAGCGCGGTCGCTGGTCGATGGAGTCCACAGTCGTGGAAGTAG
GTGTCTCCTCGACTGATCTGCCACGCAACAATAACATCATCGATATGGTC
CAAGATGCCGTGACCGCTGCTCTTTCGCATACAGGAGCACGCAACTATAC
GGTGGTTCAGCTGCCCACGGTTTATACCAATGAGAATGGGCGAGACGAGC
CAGCAGAGAACAGCCGAAGCTATAACAAGTGAGGGAGCAGCCAGTGGAGC
TGCAAGTAATGCTAGTGGTGAAACCACAGCTGCTACTGTGATTATCGAGG
ATGTTATCGAAACGGACGACGAAGTGGCCGATGGAGCATCAGATCGTTCG
GTCACGCCAACACCAGAGCCGGAGCGGAAGAGCAGTTGGTGGCCAGCAAG
TCACTGCAGCAGAGACTCCCACATCTCGGTTGGATCAGCAATTGACGCGG
CTGCGAGCGCCAACACTCAGACCCAGCGACGCACTCGTCCTCAAGGGTTG
TCAAGTTATTTCAGCACATCGTGGCGACAGCTCGCCTGGCGCTTGTTGAT
CGTACTATGAATCTCCGATGATC
FMO12971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7546-RG | 4781 | CG7546-RG | 392..1509 | 9..1110 | 5050 | 97.7 | Plus |
| CG7546-RE | 5138 | CG7546-RE | 392..1509 | 9..1110 | 5050 | 97.7 | Plus |
| CG7546-RD | 5282 | CG7546-RD | 392..1509 | 9..1110 | 5050 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7511972..7512574 | 404..1004 | 2805 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7511704..7511916 | 192..404 | 1065 | 100 | Plus |
| 3L | 28110227 | 3L | 7511509..7511628 | 73..192 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 7511377..7511442 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:33 has no hits.
FMO12971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:34 Download gff for
FMO12971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7546-RC | 388..1449 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:21 Download gff for
FMO12971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7546-RD | 392..1453 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:00 Download gff for
FMO12971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7546-RD | 392..1453 | 9..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:00 Download gff for
FMO12971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7511705..7511916 | 193..404 | 100 | -> | Plus |
| 3L | 7511377..7511442 | 9..74 | 100 | -> | Plus |
| 3L | 7511511..7511628 | 75..192 | 100 | -> | Plus |
| 3L | 7511973..7512638 | 405..1060 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:21 Download gff for
FMO12971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7504477..7504542 | 9..74 | 100 | -> | Plus |
| arm_3L | 7504611..7504728 | 75..192 | 100 | -> | Plus |
| arm_3L | 7504805..7505016 | 193..404 | 100 | -> | Plus |
| arm_3L | 7505073..7505738 | 405..1060 | 97 | | Plus |
