FMO12972.5prime Sequence
970 bp (970 high quality bases) assembled on 2013-01-29
> FMO12972.5prime
CAGTCGACATGATAAAGTGCATCTGGCTGCTGTTCTCCACATTATATATT
CAAGATACAGGCGCTTCAGATAAATGGTGCAAAGCTGACCTGTGCCGAGG
ACAACACGTGCTCTGCGATGACAATGGAAATTTTGAATCCACTTGTCCCA
AACAAGCCGCAGCCATGGTGAAAATGAGCTGGGATATGATAGCCCTCATC
GTGGACAAGCACAATGAATATCGCAACAAGTTCGCCGGCGGAATGGATCA
GAATCCGAAGGCGGCAAGGATGACCACGATCGAATGGGATCCGGAACTGG
CCAAAGTGGCCGACGGTCTGGTACGTCGTTGTGAGCCAATCCGAGATCAG
TGCGCCATAACCCCAAATTACGGTCATGCGGAAGTCAGCTATTCGCTGGA
AAAGTACTTCTGCATGACCACGAAAAAGGAGGCCCTGAGGAAGCAACTCG
ATCACTGGTTTGACCCCAATAGTAAAGATGAAGTGCAGAAGCTGTTCTTC
TCATGGACTAAAAATCAGCAGGAACTGTCCAAAAACTACTTTCAGGTATT
GAGGGATCGAGCTAATCGCGTGGGCTGCGCCATAGTTGAGTATGTTCGGC
CAGCACTGGTCCACCAGTTGCTAAAGTGCGTCTACAACTGCGGAGTGAGT
CTCTGTGAGGAGGAGGATAATCCCGTCTACGAGGACACCGACGAAGAAGT
CGCTTCAGAGTGCATGAAGGGAAGCAATAAGCAATACAAGAATCTTTGCC
ACAAAGATGAGCTCGTGAAGACCTGCAATGGTGGCTCACTTTTCGTCGAA
CCTGAAAATGATTATAACGATGGTCAAGAGAGATATGGAAAACGATTATG
AATTCGAGACCACCGTGTTCACACTTCCAACGTACGATCCAAACGATGTG
TTGCCAACGCTACCAGACACCCAGATTTAAATTTCATACATAGGTAAAGG
ACGCAAGCTTTCTAGACCAT
FMO12972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10651-RB | 1061 | CG10651-RB | 22..953 | 8..936 | 4570 | 99.6 | Plus |
| CG10651-RA | 1011 | CG10651-RA | 22..953 | 8..936 | 4570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20134331..20134723 | 521..129 | 1965 | 100 | Minus |
| 2L | 23513712 | 2L | 20133863..20134281 | 936..521 | 1930 | 99 | Minus |
| 2L | 23513712 | 2L | 20134782..20134902 | 128..8 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:39 has no hits.
FMO12972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:35 Download gff for
FMO12972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10651-RA | 17..970 | 1..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:25 Download gff for
FMO12972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10651-RA | 17..970 | 1..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:04 Download gff for
FMO12972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10651-RA | 17..970 | 1..952 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:04 Download gff for
FMO12972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20133846..20134281 | 521..952 | 98 | <- | Minus |
| 2L | 20134332..20134723 | 129..520 | 100 | <- | Minus |
| 2L | 20134782..20134906 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:25 Download gff for
FMO12972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20133846..20134281 | 521..952 | 98 | <- | Minus |
| arm_2L | 20134332..20134723 | 129..520 | 100 | <- | Minus |
| arm_2L | 20134782..20134906 | 1..128 | 96 | | Minus |
