FMO12973.5prime Sequence
794 bp (794 high quality bases) assembled on 2013-01-29
> FMO12973.5prime
CAGTCGACATGTATAGATCACACATCGCTGTCATTTGTGCCTTCGTGGGC
ATATTCGTGGGGACAGTTGTCCAGTCTGCTCCTTTTTCCAATGATCCTGC
AGAGGTCCCAAACTTCTATGAATTGTTCAATAATCCCGATGCACACTTAT
CCTTGACCAATGGTCCCGACACGATCCATTTCATCGAGGAACATGGTTAT
CCAGTTGAGCGACACTATGTGACCACTGAAGATGGCTACATTATCAGCCT
CTTCCGAATTCCATACTCGCACAATATCCAAAACCAGCAAGAAAAGAGGC
CCATTGCTTTCATTCAACACGGTCTTTTTGCCAGCTCCGACTTTTGGCCA
AGCTTGGGACCGGATGATGGACTTCCTTTCCTGCTCTCCGATGCTGGATA
CGATGTTTGGCTGGGCAATGCTCGTGGAAACAGATACTCGAAAAACCATA
CCTCTCGTCTGACAAGTCATCCGGACTTCTGGCGCTTCAGTTGGCACGAG
ATTGGATACTTTGATATTGCCGCAGCTATTGACTATACCCTGTCCACGGA
GAACGGACAGGATCAGAAGGGTATCCACTACATAGGACACTCCCCAAGGC
ACCACGGTTATGTTTGTGCTGCTGTCCTCAAGACCGGAATATAACGACAA
GATCAAGACGGCTCACATGCTGGCTCCTGTGGCATTTATGGATCACATGG
ACGATGTTATGGTCAACACCTTGTCTCCTTACCTCGGTTTTAACAATATC
TACTCGACCCTCTTCTGTTCTCAAGAATTCTTGCCCCACAACAA
FMO12973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31091-RC | 2149 | CG31091-RC | 692..1474 | 9..792 | 3895 | 99.9 | Plus |
| CG31091-RB | 1497 | CG31091-RB | 40..822 | 9..792 | 3895 | 99.9 | Plus |
| mag-RA | 1477 | CG5932-RA | 324..384 | 380..440 | 185 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25900813..25901431 | 173..792 | 3050 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25900594..25900758 | 9..173 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 20461006..20461066 | 380..440 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:48 has no hits.
FMO12973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:42 Download gff for
FMO12973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RA | 682..1474 | 1..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:12 Download gff for
FMO12973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RB | 30..822 | 1..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:45 Download gff for
FMO12973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RB | 30..822 | 1..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:45 Download gff for
FMO12973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25900584..25900758 | 1..173 | 97 | -> | Plus |
| 3R | 25900814..25901431 | 174..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:12 Download gff for
FMO12973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21726306..21726480 | 1..173 | 97 | -> | Plus |
| arm_3R | 21726536..21727153 | 174..792 | 99 | | Plus |
