FMO12981.5prime Sequence
1053 bp (954 high quality bases) assembled on 2013-01-29
> FMO12981.5prime
CAGTCGACATGGCCGCTGTGAATGCTAGCAATGCGTTCGCCAATCTAACG
GGACTGAGTGCGGCGGCGCTGCGAAACGTGAGTGCCGCCCAAACGACGGC
GGTGGCGGCCGTCGCCAGCACAGTGGCCACCATCCAGCACCGACTGATGA
TCGGCAACCGGCAGAGTTTGCCGCCGGCGGGACCACCCAGCGAAGGATCT
AATGAGGATGGCGGTTTTCCCGGCGACGGCGACGACGACAGCAGTGCGGC
CAAGCGGCGCAGGTCGCGCACCAACTTCAACTCCTGGCAACTGGAGGAGC
TGGAGAGGGCCTTCTCCGCCAGCCACTATCCGGACATCTTCATGCGGGAG
GCCCTGGCCATGCGGCTGGACCTCAAGGAGTCGCGAGTTGCGGTATGGTT
CCAGAATCGACGTGCCAAGGTGCGTAAGCGCGAGCACACGAATAAGGGAC
CCGGCCGCCCCGCCCACAACGCCCAGCCGCAGACCTGCAGCGGTGAGCCC
ATTCCGCCCAACGAGCTCAAGGCCAAAGAGCGAGCCCGTCGTCGAAAGAA
GCTGGCCAAGGCCATCGACCGGCAGGCCCGGAAACTGCAGGCCAAGGGCA
TCACCGTGGACCTGGAGGCCCTCAAGGCCGAGTACATATCACAGCACAAG
GCGAACGGCACCTTCTCCGATTCGGACCTGGAGGACGATGGCATCCAGAT
CGACGTGGTGGGCGGCACGGACAGCGACGACGAGGGCGACAGCGACGCCG
TCAGTCCGGTGCGTCTCGGTGGCGGAGGAGGTGGTGGCGGTGGCACTGGA
GGCGGCGGAGTGGTGGAGCCTCCTCGTCGCTCCACTGCGGACTGATGGCG
ATGGCGACAGTTCGCGGGCGGGCAGCTTTATCGGCGGCGCGGTAGCCTGG
CAGCCTAGTTCGGTGCCCCACCCTCGATGCTCTCCAATGGACCGTCCAGT
TCGCAGTCTGATCAATGATGGCATGAATTCGAGGACGCGGACGGGAACTG
CACTCGCAAAGTCCGTCTCTCCTTTCTGGCTCAAGCCTTCATATAATGAA
CCT
FMO12981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc-4-RC | 2995 | CG6269-RC | 843..1794 | 9..953 | 4525 | 98.8 | Plus |
| unc-4-RB | 2866 | CG6269-RB | 843..1794 | 9..953 | 4525 | 98.8 | Plus |
| unc-4-RD | 2870 | CG6269-RD | 843..1798 | 9..953 | 4475 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17777079..17777494 | 532..941 | 1765 | 98.3 | Plus |
| X | 23542271 | X | 17769411..17769617 | 9..215 | 1020 | 99.5 | Plus |
| X | 23542271 | X | 17776096..17776277 | 213..394 | 910 | 100 | Plus |
| X | 23542271 | X | 17776415..17776555 | 392..532 | 690 | 99.3 | Plus |
| X | 23542271 | X | 17811785..17811875 | 270..360 | 230 | 83.5 | Plus |
| X | 23542271 | X | 17813309..17813422 | 392..505 | 225 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:06 has no hits.
FMO12981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:44 Download gff for
FMO12981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-4-RA | 22..988 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:22 Download gff for
FMO12981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-4-RB | 836..1802 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:55 Download gff for
FMO12981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-4-RB | 836..1802 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:55 Download gff for
FMO12981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17769404..17769615 | 1..213 | 97 | -> | Plus |
| X | 17776097..17776275 | 214..392 | 100 | -> | Plus |
| X | 17776416..17776555 | 393..532 | 99 | -> | Plus |
| X | 17777080..17777494 | 533..941 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:22 Download gff for
FMO12981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17670130..17670308 | 214..392 | 100 | -> | Plus |
| arm_X | 17663437..17663648 | 1..213 | 97 | -> | Plus |
| arm_X | 17670449..17670588 | 393..532 | 99 | -> | Plus |
| arm_X | 17671113..17671527 | 533..941 | 98 | == | Plus |
