FMO12983.5prime Sequence
1118 bp (1011 high quality bases) assembled on 2013-01-29
> FMO12983.5prime
CAGTCGACATGGACCAGTCTAAACAGGTTTTGCGGGACTATTGCGGCGAC
GGCAATGGTACCTGTGCATCGTCCTTGAAGGAAATCACCTTAATTGAGAC
CGTGACCAGTTTCCTGGAGGAGAATGGCGCCGCCGAAATCGACAGAAGGG
TCCTGCGCAAACTAGCCGAGGCACTGTCCAAAAGCATAGACGACACCAGT
CCGGGAGCCCTGCAAGATGTCACCATGGAGAACTCATATGCCAGTTTTGA
CGTTCCACGACCTCCAGGCGGCGGCAACTCGCCCTTGCCGTCACAGGGTC
GCTCTGTACGCGAATTGGAGGAGCAGATGTCCGCGCTGCGCAAGGAGAAC
TTCAATCTAAAGCTGCGCATCTACTTCCTCGAGGAGGGTCAGCCGGGTGC
CCGGGCAGACAGCTCCACAGAATCCTTAAGCAAACAGCTCATCGATGCCA
AGATCGAAATCGCGACATTGAGAAAAACTGTCGATGTAAAGATGGAGCTG
CTCAAGGATGCCGCTCGAGCCATTTCTCATCACGAGGAATTGCAGCGCAA
AGCAGACATTGACAGCCAGGCAATAATCGACGAGTTGCAAGAGCAAATAC
ACGCCTATCAGATGGCGGAGTCTGGTGGTCAACCTGTCGAAAATATTGCC
AAAACCAGGAAAATGTTGCGCCTTGAATCGGAGGTGCAGAGATTGGAGGA
GGAACTGGTGAATATCGAAGCTCGTAACGTTGCAGCCCGGAACGAGCTGG
AATTCATGTTGGCCGAGCGCCTAGAATCCCTAACAGCCTGTGAGGGCAAG
ATTCAAGAGCTGGCCATCAAGAATTCCGAACTGGTAGAGCGTCTTGAAAA
GGAACAGCATCCGCCGAGTCATCCAACGCCAATCGAGATCTGGGCGCCTA
CTGGCGGATAAGATTTGCGAGCTGCAAGAAGCTCAGGAGAGCTCAGGAGC
GCGAGCGCATCACGAGCAGGCATGCTGCACCATTCAAAGCTATGCAAGCT
AAGCAGCCCAGGAGAACGAGAATAAGAAGCTCAACCAGGAGAACGACAGT
CGGCAAACAGAAGACGACTGCCGCTTAAAACGTATTTCGCATTCTTCCAG
CGGCCGTCATGGAGTGCA
FMO12983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RA | 4322 | CG4832-RA | 117..1227 | 8..1107 | 4975 | 97.4 | Plus |
| cnn-RL | 5012 | CG4832-RL | 117..988 | 8..878 | 4335 | 99.9 | Plus |
| cnn-RK | 2006 | CG4832-RK | 117..988 | 8..878 | 4335 | 99.9 | Plus |
| cnn-RL | 5012 | CG4832-RL | 1678..1917 | 878..1107 | 645 | 88.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13444765..13445138 | 611..238 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 13444427..13444696 | 878..610 | 1300 | 99.6 | Minus |
| 2R | 25286936 | 2R | 13450174..13450359 | 193..8 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13442939..13443128 | 1059..878 | 385 | 91.1 | Minus |
| 2R | 25286936 | 2R | 13445547..13445590 | 237..194 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:36 has no hits.
FMO12983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:41 Download gff for
FMO12983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 122..1247 | 1..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:03 Download gff for
FMO12983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 112..1237 | 1..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:39 Download gff for
FMO12983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 112..1237 | 1..1117 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:39 Download gff for
FMO12983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13444428..13444694 | 612..877 | 99 | <- | Minus |
| 2R | 13444765..13445138 | 238..611 | 100 | <- | Minus |
| 2R | 13445547..13445590 | 194..237 | 100 | <- | Minus |
| 2R | 13450174..13450363 | 1..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:03 Download gff for
FMO12983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9331933..9332199 | 612..877 | 99 | <- | Minus |
| arm_2R | 9332270..9332643 | 238..611 | 100 | <- | Minus |
| arm_2R | 9333052..9333095 | 194..237 | 100 | <- | Minus |
| arm_2R | 9337679..9337868 | 1..193 | 97 | | Minus |
