FMO12988.5prime Sequence
1097 bp (972 high quality bases) assembled on 2013-01-29
> FMO12988.5prime
CAGTCCACATGGAGGAAAAGCGCATCGCCGACTACTTTGTGGTGGCCGGA
ATGCCGGAGAATCCGCAGCTGCTGCAGGAGAACAGCTTCAATGACTCGGG
AAGATTGAGAGCGGCCACCACCATCGAACCGATCACGGACATCGGCGTCT
ATTTCCCGCTGCTGGGCGAGGAGGTGCCCGAGGGATACGAGATCCTCTCG
CACACGCCCACGGGTCTACAGGCGAACCTCAATCACGGATCGGTCCGCAC
CACCGACTGCTACATCTACTTCCGGCGTGGCAAGGATCGCCCGCCGCTGG
TGGACATAGGAGTCCTGTACGATGGCCACGAGCGGATCATGTCGGATGCG
GAAATCGTTGCGGAGACGCCTGGCGGCAGGGTGGCCAATGTGAACAACTC
GTCCGCGAAGACGTTCCTCACGTACCGACGCGCCCGAGCGGACATGCCCT
GCAACGAGCTGGTGGTCACCGAACTGTGCGTCATTGTCCAGAGCAAGGGT
GAGCGGGCTCCGCACGCCTTTTGCCTAATCTACAAGACCCTGAACAAGGG
CTATGTTGGCAGCGACGTCTACCTGTGCTACAAGAAGTCCATGTACCGGC
CTAAGCACATCAGCTACAAGCCGGAGATCCTGCTGCGCTACCCCACCTTC
GACCACACCGACTTCCCGCTGAATCTGTGCCCGAGCGTGCCGCTCTTCTG
CCTGCCAATGAGCGCCTCCCTGGAGGCCTGGCCACACGTCAACGGCACGG
AGAAGCGGAAACCCATCAGTCCGGTGTTCAGCACTTTTGTGCTCACCGTG
AGCGATGGCACCTACAAGGTTTACGGATCGGCGTTAACTTTCTACGAGGA
TTACGATGAGTCAAAGTTGTCGGCTGAGCAAACGAGCTGCTCGGTTGGGA
CGAGGAGTTCGCGCCCAGCACTCGCTGCACATGATCAAGCTATATGTCTG
CTGTCGCATCATCCCTTTGGCGACACCTTCGACAAATGACTGAAGTACTT
TCATCGAATGGTCTGTATGACGTTAATATTTCTCATTCCGGGGGAGGCTA
CATCCCCCACTGGCTGGAACGAATAACGATTTCCGTGTCAAGATTAC
FMO12988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crag-RD | 7001 | CG12737-RD | 577..1632 | 8..1059 | 5000 | 98.6 | Plus |
| Crag-RB | 6115 | CG12737-RB | 577..1632 | 8..1059 | 5000 | 98.6 | Plus |
| Crag-RA | 6196 | CG12737-RA | 577..1632 | 8..1059 | 5000 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8594091..8594639 | 308..856 | 2730 | 99.8 | Plus |
| X | 23542271 | X | 8593495..8593797 | 8..310 | 1515 | 100 | Plus |
| X | 23542271 | X | 8594698..8594848 | 857..1004 | 560 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:35 has no hits.
FMO12988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:47 Download gff for
FMO12988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crag-RC | 19..1066 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:41 Download gff for
FMO12988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crag-RA | 571..1618 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:08 Download gff for
FMO12988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crag-RA | 571..1618 | 1..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:08 Download gff for
FMO12988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8593489..8593796 | 1..309 | 98 | -> | Plus |
| X | 8594093..8594639 | 310..856 | 99 | -> | Plus |
| X | 8594698..8594848 | 857..1004 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:41 Download gff for
FMO12988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8487522..8487829 | 1..309 | 98 | -> | Plus |
| arm_X | 8488126..8488672 | 310..856 | 99 | -> | Plus |
| arm_X | 8488731..8488881 | 857..1004 | 96 | -> | Plus |
