Clone FMO12990 Report

Search the DGRC for FMO12990

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:129
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11539-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12990.5prime Sequence

626 bp (626 high quality bases) assembled on 2013-01-29

> FMO12990.5prime
CAGTCGACATGCATCTAAACGAGAACACCAAAATACTGGGTCACAGGGTC
ATCCTTGTGCCCTACGAAGCGCGCCACGTGCCCAAGTACCACGAGTGGAT
GAGCAACGAGACCCTGAGGGAGTTGACCGCATCCGAGGAACTGACCTTAG
AAGAGGAGCACGAGATGCAAAGGAGTTGGAGGGAGGACAGCGACAAGCTG
ACCTTCATTGTCCTGGATGCAGAGACTTATTCGCGTGATCAGGATGAGAT
TGCCGCCATGGTGGGCGACACCAATCTCTTCCTGCACCAAGATCCCGATA
GCCAGATACCAACGGCGGAGGCGGAAATCATGATTGCCGAACCTTATGCA
CGGGGCAAGGGATTCGGCAGGGAAGCCATGCTCCTCATGCTCAAGTACGC
CCAATCGCAGCCCCAGCTTAAATTGGATAAATTCGAGGTCAAGATCGACA
TGGACAACGCTGCATCGCTGCATTTGTTTAAGAGTTTTATGTTCGTGGAG
ACGCGTCGAGTGGAGATCTTCCACGAGGTCACCCTGGAGCGACCTATCAC
TCCAGATTGGATCAACTGGCTGGACCAGCAGGTGGATCTGCGTATGCAGT
GCTATCAGGCAAGCTTTCTAGACCAT

FMO12990.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539-RB 810 CG11539-RB 91..690 9..608 3000 100 Plus
CG11539-RA 737 CG11539-RA 18..617 9..608 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31615404..31616003 608..9 3000 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:37:47 has no hits.

FMO12990.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:49 Download gff for FMO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 15..621 2..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:49 Download gff for FMO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 15..621 2..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:17 Download gff for FMO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 15..621 2..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:17 Download gff for FMO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31615399..31616006 2..612 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:49 Download gff for FMO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27441121..27441728 2..612 99   Minus