FMO12992.5prime Sequence
797 bp (675 high quality bases) assembled on 2013-01-29
> FMO12992.5prime
CAGTCGACATGGCAAAGCCAAAAGTCGGCGAATCGCTTCAGGAGCAATCA
TTAACGTTCTCAGAGGCGCCGCTAATGGCACACGAAAATGGCAAGCAGGA
GGAGCGGCCCCAGTGGAGCTGGTCCCTCAATTGGGCGGCAATCGGATCGT
CGCTTGGTGCGGCGGTTCCCGTGGGCTATTGCACAGGAGTGATGAATAGT
CCCGCTGAACTCATGCGCTCCTGGTGCAACGAGACACTGATTGCCAGCTA
TGACCTGAACTTAAGTGATGCGGGGTTGGAAATACTGTGGTCTGCCATAG
TCTCCATATTCCTCGTTGGAGGCGCCATTGGATCAGTTGTTGGAGCCACC
ATGGCCAATCGGTTCGGACGTCGCGGCTGCTTCTTCATCTGTGGCCTCCT
TCTGGGTCTGGGAGCCATTAGCTTTTACGCATGTCGACCGTTGCGTTCCG
TGGAGCTCCTTCTGCTGGGTCGGATGATGGTTGGTCTGGCCGGCGGTCTG
CTAACATCCTTTATGTCCATGTGGCACAGCGAAATCTCGGCTCTCTCCCA
GCGCAGCACCTTGGCTCCCCTCTGTCCAATGGGCTTGACCTTGGGGGTGG
TGATTGCGCAGGTCTGCAGCCTGCGCTCGGTGCTTGGAGGTCGTGAGAAC
TGGCACTTCGGCCTCCCATTCGACGGTCTTCTCGTGCTTGTGTGTATGTA
CCTTATAGGGGTATCCTGAGAGCACCAGGTGGTTGTTCCTCGTCCCAGGT
CGTATGGATGATGCTCGTCGCCAGCTTCAACACTAAAGGGTCACACA
FMO12992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7882-RC | 2266 | CG7882-RC | 253..1043 | 9..796 | 3670 | 97.9 | Plus |
| CG7882-RA | 1802 | CG7882-RA | 155..945 | 9..796 | 3670 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5958185..5958756 | 210..779 | 2595 | 97.7 | Plus |
| 2R | 25286936 | 2R | 5958016..5958129 | 96..209 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 5957873..5957963 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:54 has no hits.
FMO12992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:49 Download gff for
FMO12992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 15..809 | 1..796 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:54 Download gff for
FMO12992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 151..945 | 1..796 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:21 Download gff for
FMO12992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 151..945 | 1..796 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:21 Download gff for
FMO12992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5957869..5957962 | 1..98 | 95 | -> | Plus |
| 2R | 5958019..5958129 | 99..209 | 100 | -> | Plus |
| 2R | 5958185..5958774 | 210..796 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:54 Download gff for
FMO12992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1845374..1845467 | 1..98 | 95 | -> | Plus |
| arm_2R | 1845524..1845634 | 99..209 | 100 | -> | Plus |
| arm_2R | 1845690..1846279 | 210..796 | 97 | | Plus |
