FMO12993.5prime Sequence
1034 bp (965 high quality bases) assembled on 2013-01-29
> FMO12993.5prime
CAGTCGACATGTCCACATCCACCGCCACAACGAGCGTTATCACGTCCAAC
GAGCTCTCGCTGTCCGGCCACGCCCACGGTCACGGTCACGCCCACCAGTT
GCACCAGCACACCCACAGCCGCCTAGGAGTTGGCGTTGGTGTTGGCATCC
TTAGCGACGCATCCCTATCGCCCATCCAACAAGGCAGTGGCGGCCACAGC
GGCGGAGGTAACACAAACAGTTCACCACTGGCGCCCAACGGAGTGCCACT
TCTCACAACAATGCACCGATCACCGGACTCACCGCAGCCAGAATTGGCCA
CCATGACGAACGTCAACGTGCTGGATCTGCACACGGATAACTCCAAGCTG
TACGACAAGGAGGCTGTATTTATATACGAAACGCCCAAGGTGGTGATGCC
AGCGGATGGCGGGGGTGGCAATAATTCCGATGAAGGTCATGCCATCGATG
CGCGGATTGCGGCCCAAATGGGCAACCAAGCCCAGCAACAGCAGCAGCAG
CAACAGCAGACGGAACACCAGCCGCTGGCCAAGATCGAGTTCGATGAGAA
CCAGATAATCCGGGTGGTGGGACCAAATGGCGAGCAACAGCAAATCATCT
CGCGGGAGATCATCAATGGGGAGCATCATATCCTGTCGCGAAACGAGGCT
GGTGAGCACATTCTCACACGGATCGTCAGTGATCCCTCCAAGTTGATGCC
CAATGACAATGCAGTGGCCACGGCCATGTACAACCAGGCCCAAAAGATGA
ACAATGATCACGGGCAGGCGGTATATCAGACATCACCATTGCCGCTAGAC
GCGTCTGTATTGCATTATAGTGACGGCAATGATTCGAATGTAATTAAGAC
GGAGCCGATATCTACGAGATCACAAGAAACATGCGGCTGCAGCAGCAGCT
GCTGCCGGCGGAGGATCATCATATACACCTCTTCCGATCCGAACGGAGTG
ATGTGAAACACTGCCCCATTTGACGGTACCCAAACTTGATCCCGACTCTC
ATCAGCCATAAGCATTATAATTTGATCTACACGA
FMO12993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grh-RP | 6230 | CG42311-RP | 2300..3332 | 9..1031 | 4800 | 98.4 | Plus |
| grh-RL | 6692 | CG42311-RL | 838..1870 | 9..1031 | 4800 | 98.4 | Plus |
| grh-RH | 3972 | CG42311-RH | 838..1870 | 9..1031 | 4800 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17808411..17809406 | 9..996 | 4605 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:00 has no hits.
FMO12993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:42:50 Download gff for
FMO12993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RJ | 908..1951 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:57 Download gff for
FMO12993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RJ | 1451..2494 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:24 Download gff for
FMO12993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 830..1873 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:24 Download gff for
FMO12993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17808403..17809446 | 1..1033 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:57 Download gff for
FMO12993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13695908..13696951 | 1..1033 | 97 | | Plus |
