FMO12996.5prime Sequence
1093 bp (1026 high quality bases) assembled on 2013-01-29
> FMO12996.5prime
CAGTCGACATGTTAACGTTTTGGGAAAAGACATCAAAAAAATCAGCAGAT
ATACCAAACCAAATCAGCGGAGCACTTGCATCAAGTAACTTAGCTATCTG
CGCCTGTCTAATAGTAATCTTCATTGCATCTGTAACCACGGCCAAAACAC
CGGATCAGGAAGCTATCCATCACAAAAATGACGAATTTCCGGAAGAGGAA
AGCGACATGGTGATGGAGCCAAATGATTTTTCGCCAATCACTGTACTAAA
GTCACATGAACAACACTTTCATATGCCGCCCACAACGCATCTTCAGCCAC
AAGTTCAAGCTAGAATTCATCCTAGAGTTCAACCCAGAAAATTTCAATCC
GCACTCCAACAAAATGCTGAGGAGCCATTCCGGCCCATTGCTAATCCAAA
TACGAAGATTGTTGGCGATTCTCATACGCAGGCTGCCCAAAATTTCTACC
CACCTTTCTACCATGAGGCTCCTCCACTGGGCCATTCCAGACCTTACTTT
GGTCACGGCCCGCCTGTATCGGAAACAACTCCTTTATCCTTACCCCTTCC
GCTCTTGACAACTCAACAGCAACAGCCAGCAACTCAGCAGCGGACTTTCG
ATGCCAGTATACTTGGAAGTGGGGATTTTGGTGTCCTTAGAGGTGGAACC
TTCTATCCGGAGGAGGAAATGCCCTATCACCCCGAAGATAACAGTGATTA
CATCTATGGAGATGCTAACAATGGACACGGTCGACCATCTGAGGGTTTTG
TTCAAAAGTACACGTATCCAGAGGAGCAGTTCGCTAATTTTCGCGATTTT
GCCGATATCAACACGCCCGCCGATACGGCGTTTTCGCAATTTGTGGTGGT
GTATGCGGCCAAAAATGCCTCTGTACCACACTCTCATCCGCATCCTAAAA
ACATATTTGAACAGTTAGAGCAGCTGGACAGGAAAAAGAGCTGAAAAATA
CCGGAATTTGAGAACAAACTTCTTCGAAAATAAAGTCGAATTGTCTATAA
CAGGTTGCAAAAAAATACCGAAAAAAACCGGCCCCCAAGTCAGGATCTTC
AGAAATAAAGCCTTTACTAGCTTAATGCAAGCTTTCTAGACAT
FMO12996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32816-RF | 1834 | CG32816-RF | 310..1380 | 9..1072 | 5045 | 98.6 | Plus |
| CG32816-RE | 1730 | CG32816-RE | 206..1276 | 9..1072 | 5045 | 98.6 | Plus |
| CG32816-RA | 1821 | CG32816-RA | 297..1367 | 9..1072 | 5045 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 317030..317929 | 1072..180 | 3970 | 98.1 | Minus |
| X | 23542271 | X | 333565..333736 | 180..9 | 860 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6855..6904 | 934..982 | 121 | 74 | Plus |
FMO12996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:27 Download gff for
FMO12996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RB | 279..1360 | 9..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:27 Download gff for
FMO12996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RB | 281..1362 | 9..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:44 Download gff for
FMO12996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 297..1378 | 9..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:44 Download gff for
FMO12996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 317019..317928 | 181..1082 | 97 | <- | Minus |
| X | 333565..333736 | 9..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:27 Download gff for
FMO12996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 211052..211961 | 181..1082 | 97 | <- | Minus |
| arm_X | 227598..227769 | 9..180 | 100 | | Minus |
