FMO13005.5prime Sequence
1144 bp (1024 high quality bases) assembled on 2013-01-30
> FMO13005.5prime
CAGTCGACATGTCCAAATACGATCTGCTTTATCTAACGGCGCAGCTAACG
CTGGTCTGCTGTCTGATTGGAATCCATGGATCTATTTTGCCCGGAAGTCA
TGGGATCATAGAATGCGAGCACTTCGACGAGAAGATGTGCAACACAACGC
AGCAATGTGAAACACGGATAGAGCACTGTAAGATGGAGGCGGATAAGTTT
CCCAGCTGCTATGTCCTTTGGTCGGTCAACGAGACAACGGGCATCCTGCG
CATCAAGATGAAGGGCTGCTTCACGGACATGCACGAATGCAATCAGACGG
AGTGCGTGACCAGTGCAGAGCCACGGCAGGGAAACATTCACTTCTGCTGC
TGCAAGGGATCGCGGTGCAATTCCAACCAGAAATATATTAAAAGCACCAC
GGAGGCAACCACACAAGTGCCCAAGGAGAAGACGCAGGACGGCAGCAATT
TGATATACATCTACATTGGCACCTCCGTTTTCAGCGTGCTCATGGTCATT
GTTGGCATGGGCCTTCTTCTCTACCGACGCCGCAAGCAGGCGCACTTTAA
CGAGATACCCACGCACGAGGCTGAGATAACAAACTCATCGCCATTGCTCA
GCAACCGTCCCATTCAGCTGCTGGAACAGAAGGCCAGTGGTAGATTCGGT
GATGTGTGGCAAGCCAAGCTCAACAATCAGGATGTGGCCGTCAAGATCTT
TCGCATGCAGGAAAAAGAATCGTGGACCACGGAGCACGATATCTACAAGC
TGCCGCGCATGCGCCATCCGAACATCCTCGAATTCCTGGGCGTTGAGAAG
CACATGGACAAGCCGGAATATTGGCTGATATCCACCTACCAGCATAACGG
ATCACTATGCGACTACCTCAAATCGCACACGATCTCATGGCCAGAGTTGT
GCCGCATCGCTGAGTCCATGGCCAATGACTGCACATCTGCACGAGAGATC
CCGGCATCAAAGACCGATGGGCTAAACCATCGATAGCTCCACGAGACTCA
AGTCTAGACGTACTGCTTAGAGCGATTCTGACGCCTGTATAGCTGACTTG
GTTTGACCATGAATATCAGCAGCAGCCTGCGGCGAATAACACACGTTCAG
TAGCACTCGACGTACTGTTGCAAGGTCTTGAGGTACATCATCAT
FMO13005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| put-RB | 2713 | CG7904-RB | 459..1577 | 9..1113 | 5020 | 97.7 | Plus |
| put-RC | 4013 | CG7904-RC | 459..1577 | 9..1113 | 5020 | 97.7 | Plus |
| put-RA | 2713 | CG7904-RA | 459..1577 | 9..1113 | 5020 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14621582..14622090 | 1062..563 | 1980 | 96.3 | Minus |
| 3R | 32079331 | 3R | 14623486..14623673 | 241..54 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 14623243..14623420 | 417..240 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 14622158..14622305 | 563..416 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 14625200..14625245 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:47 has no hits.
FMO13005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:18 Download gff for
FMO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| put-RA | 455..1526 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:18 Download gff for
FMO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| put-RA | 459..1530 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:18 Download gff for
FMO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| put-RA | 459..1530 | 9..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:18 Download gff for
FMO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14621573..14622089 | 564..1070 | 96 | <- | Minus |
| 3R | 14622158..14622303 | 418..563 | 100 | <- | Minus |
| 3R | 14623243..14623419 | 241..417 | 100 | <- | Minus |
| 3R | 14623487..14623672 | 55..240 | 100 | <- | Minus |
| 3R | 14625200..14625245 | 9..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:18 Download gff for
FMO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10447295..10447811 | 564..1070 | 96 | <- | Minus |
| arm_3R | 10447880..10448025 | 418..563 | 100 | <- | Minus |
| arm_3R | 10448965..10449141 | 241..417 | 100 | <- | Minus |
| arm_3R | 10449209..10449394 | 55..240 | 100 | <- | Minus |
| arm_3R | 10450922..10450967 | 9..54 | 100 | | Minus |
