FMO13006.5prime Sequence
1125 bp (1020 high quality bases) assembled on 2013-01-30
> FMO13006.5prime
CAGTCGACATGCGAAGAAACCTGCGCTTAGACTGGAGGGCCCTGGCGCTG
CTGGGCGCCCTCCTCTCGTTCATCATCGCCTGGCGGGGCCTTGTATCTGC
GATGCCCCTCATGGCCATGGACAACAACTTGACAGACTCATCCGGATCCA
CAAACACATCCACATCCTCCACATCAAAATACAACAGCACGAACAATAGT
AATCTGTTTAGTAATAGTTATCTACAAAGTGATCATAGTCGTAGTAGTTT
AGTGCCGAGCGCAGTGAGTGAACGTAGTGTAAATCAACCCACAAATCAAA
GTATTAATGCTGAATTTAATCAGAGCTTAAGCACGCATCCAACTGCCATA
ACAAGCACACCACAAACCCAAACTCAAACCCAAATCCAATCCCAATACCC
ATCGCAGGCGGAGGATTCCGATCAGCTGGAGGAGCCGCTGGGATTCGTCA
TCTCAGCGATGCCGAACGAGCATCTGGCGGTCCTGTCGCGTACCGAACGC
AGCATTCGTCACCAGAATCAGCAGCAGCAGAAGAAGCATCACCATCATCA
CCAACAACAGCAACAGCAACAGCATCAGCAGCAGCAACCAATGTCGCCCG
CTGACAATAATTTCATTGGTTCGAAATCGAAAAGACTGAGCAACCCTAGA
AGTAGTCTTAACATAAATAGCAGTAGCAGTAACACGCCCATCAGCAATCT
GGACCGTAACGAACGATCCACGGTGCCACAGTCCCATTTGGCCTGTACCT
CGCGCAAGATCCAGCTGTACATCAAAAATCGCATCCTTCAGATATTGCGG
GATGGCGTTGTCAACGGAACCCAGGACGAGAATAGTGAATTCACAATTCT
CCAGCGATCCACGGTGGATGTGGGACGCATCAAGTTGCAGAGTGTGGCCA
CTTGCCTGTATCTCTGCATGGACGCGTGCGTGTTCCCTACGGCTCGAAGA
CTTCACCGACGACTGCGTCTCAACGAGAACATGGGTCTTCAGAACTACAA
TACTTACTCCTCCACGTACCACTCTCAGGCGGGGCGGGTCTTTCTACTGG
CCTGATGCAATGGCCAGGCCGGGCGTATACTGATCCGCAGCGATCGCTTG
GCAAGCTGAACCTACCGAGGCACTA
FMO13006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnl-RD | 4073 | CG4608-RD | 1111..2221 | 9..1109 | 5120 | 98 | Plus |
| bnl-RC | 4295 | CG4608-RC | 1111..2221 | 9..1109 | 5120 | 98 | Plus |
| bnl-RA | 3632 | CG4608-RA | 1111..2221 | 9..1109 | 5120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19827654..19828488 | 843..9 | 4160 | 99.9 | Minus |
| 3R | 32079331 | 3R | 19800398..19800501 | 946..844 | 470 | 99 | Minus |
| 3R | 32079331 | 3R | 19797435..19797531 | 1042..947 | 405 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:53 has no hits.
FMO13006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:19 Download gff for
FMO13006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RA | 1111..2233 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:22 Download gff for
FMO13006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RA | 1111..2233 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:21 Download gff for
FMO13006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RA | 1111..2233 | 9..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:21 Download gff for
FMO13006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19797418..19797532 | 947..1057 | 93 | <- | Minus |
| 3R | 19800398..19800501 | 844..946 | 99 | <- | Minus |
| 3R | 19827654..19828488 | 9..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:22 Download gff for
FMO13006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15623140..15623254 | 947..1057 | 93 | <- | Minus |
| arm_3R | 15626120..15626223 | 844..946 | 99 | <- | Minus |
| arm_3R | 15653376..15654210 | 9..843 | 99 | | Minus |
