FMO13008.5prime Sequence
1133 bp (990 high quality bases) assembled on 2013-01-30
> FMO13008.5prime
CAGTCGACATGTCGATTGTCTGCACGCTGGAACAGAAAGTGAACTTTTTC
AAAGCGGCTGCAACGACCAAAAATCTGTTGATACTCAAAAACAATACGGA
TACGAATTACATCAATAACTACAAGCAGGATAATCCCAGCAACAATAAAT
TTCCCCGCATCCAAGCTCAAAGCAACAACAGCCATCTGCAACACCAGCAG
CAACTGCAGCAGAAACTAGCGCAGCTGCATCACTACAGCCAGCAGAAGCT
GAGCGGCAGCGACTTTCCCTACGGGCCACGCCCCCCCACCGGAGGCAAAG
AGGAGAAGCTGCTCCTGCTAGCGCCGCCGGGCAAACTCTATCCGGAGGCG
TCTGTGTCCACAGCAATGCCCGAGGTCCTCAGCGGCACGCCCACCAACAG
CCACAACAAAGCCAACATCGCCATGATGAACAACGTCCGGCTATTCAATA
TATCGCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTAACTTG
CATCCGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAATGACAG
CGGCATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGAG
ATGGAATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGCAGTCG
GCGTTGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCGA
ATTCACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGAGAA
CGAACAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGAC
ATGGTTTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCATGTGC
TGAACGCCCAGCTGGACGCCATACGCGACAAGTTCAACATCTCCCGGCGA
GAATCTGGTGAGCGTGAGAAAGATCCTCGCCTCGCTGCCCACCAGCGAAC
AGGTGCTGAGTAACACAAAGCGCGCAGATGAGCGGCAGTGGTGCTCCTCC
TCGGGCTCCTCGCCTCGGGCAGTGATCGGGCGAGGATCGCTCAAGTGCCA
CAATGGCTATCGGTGGGTCCACCACTATCTCCCCTGATCTACGACCATGG
CCATGGCCGCTGAGCCACGTAGAGTGTTTCACC
FMO13008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 4068 | CG14029-RF | 376..1468 | 9..1093 | 5080 | 98.4 | Plus |
| vri-RD | 3455 | CG14029-RD | 376..1468 | 9..1093 | 5080 | 98.4 | Plus |
| vri-RA | 3841 | CG14029-RA | 376..1468 | 9..1093 | 5080 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5308021..5308623 | 499..1093 | 2390 | 96.9 | Plus |
| 2L | 23513712 | 2L | 5307565..5307912 | 151..498 | 1725 | 99.7 | Plus |
| 2L | 23513712 | 2L | 5306025..5306166 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2543 | 86..233 | 150 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6946 | 191..423 | 128 | 54.9 | Plus |
FMO13008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:20 Download gff for
FMO13008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 318..1429 | 9..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:25 Download gff for
FMO13008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 318..1429 | 9..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:25 Download gff for
FMO13008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 376..1487 | 9..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:25 Download gff for
FMO13008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5306025..5306166 | 9..150 | 100 | -> | Plus |
| 2L | 5307565..5307912 | 151..498 | 99 | -> | Plus |
| 2L | 5308021..5308642 | 499..1109 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:25 Download gff for
FMO13008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5306025..5306166 | 9..150 | 100 | -> | Plus |
| arm_2L | 5307565..5307912 | 151..498 | 99 | -> | Plus |
| arm_2L | 5308021..5308642 | 499..1109 | 96 | | Plus |
