FMO13009.5prime Sequence
593 bp (593 high quality bases) assembled on 2013-01-30
> FMO13009.5prime
CAGTCGACATGGGCAATAAGTCGTCGCTTTTCCTGCGGAACGAGGAGATC
GCGCAAATCCAGGAGGAGACTGGCTTCACCCCCAACCAAATCGAGCGACT
TTACTCGCGCTTCACCTCCTTGGATCGCAATGATTGCGGAACCTTGTCCC
GGGAGGATCTGATGCGTATCCCGGAACTGGCCATTAATCCGCTGTGCGAG
CGGATAGTTCATTCCTTTTTCGCTGAGAGCAACGACGATCGGGTGAACTT
CCGGCAGTTCATGAACGTCCTGGCCCACTTCCGGCCGCTGAGGGATAACA
AGCAAAGTAAGCTCAACAGCCGGGAGGAGAAGCTGAAGTTCGCCTTCAAG
ATGTACGATCTGGATGACGATGGTGTGATCAGCAGAGACGAGCTGCTCTC
CATCCTGCACATGATGGTCGGGGCGAACATTAGCCAGGACCAGTTGGTCA
GCATTGCGGAGAGGACGATCCTGGAGGCGGACCTGTGCTGCCAGGGCAAG
ATCTCGTTCGAGGACTTCTGCAAAGCTCTGGACCGCACCGACGTGGATCA
GAAGATGTCCATACGGTTTCTCAACGCAAGCTTTCTAGACCAT
FMO13009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| elm-RB | 1321 | CG2185-RB | 139..706 | 8..575 | 2840 | 100 | Plus |
| elm-RA | 1128 | CG2185-RA | 139..706 | 8..575 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5653255..5653754 | 575..76 | 2500 | 100 | Minus |
| 3R | 32079331 | 3R | 5654656..5654723 | 75..8 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:09 has no hits.
FMO13009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:21 Download gff for
FMO13009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elm-RA | 162..746 | 1..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:29 Download gff for
FMO13009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elm-RA | 132..716 | 1..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:29 Download gff for
FMO13009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elm-RA | 132..716 | 1..586 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:29 Download gff for
FMO13009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5653245..5653754 | 76..586 | 99 | <- | Minus |
| 3R | 5654656..5654729 | 1..75 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:29 Download gff for
FMO13009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1478967..1479476 | 76..586 | 99 | <- | Minus |
| arm_3R | 1480378..1480451 | 1..75 | 96 | | Minus |
