FMO13012.5prime Sequence
1150 bp (996 high quality bases) assembled on 2013-01-30
> FMO13012.5prime
CAGTCGACATGGCCAGCAGCGCCGGAAGTGCGGCATCCGGATCCGTTGTT
CCCGGTGGCGGAGGTAGCGCCGCCTCCAGTTGTGCCACCATGGCCCTGTC
CACCGCCGGATCCGGTGGGCCGCCCGTGAACCACGCCCACGCCGTCTGCG
TGTGGGAGTTCGAGTCGCGCGGCAAGTGGCTGCCCTATTCGCCGGCGGTG
TCGCAGCACTTGGAACGCGCCCACGCCAAGAAACTGACGCGCGTCATGCT
GAGCGATGCGGATCCCAGCCTGGAGCAGTACTACGTCAACGTGCGCACAA
TGACCCAGGAATCGGAGGCGGAAACGGCCGGCTCCGGCCTGCTGACCATC
GGTGTTCGGCGCATGTTCTACGCACCCAGCTCGCCGGCGGGCAAGGGCAC
CAAGTGGGAGTGGTCGGGCGGCAGTGCCGATAGCAACTACGACTGGCGGC
CCTACAACATGCACGTCCAGTGCATCATCGAGGACGCCTGGGCGAGGGGC
GAACAAACCTTGGACCTGTGCAACACCCACATCGGCCTGCCGTACACCAT
TAACTTTTGCAATCTCACCCAGCTGCGCCAACCCAGCGGACCCATGCGCA
GCATTCGGCGTACCCAACAGGCGCCGTATCCCTTGGTGAAACTAACGCCA
CAACAGGCCAACCAACTCAAGTCGAATTCCGCCAGCGTGAGCAGCCAGTA
CAACACTCTACCCAAACTGGGAGACACCAAGAGCCTGCACAGAGTGCCCA
TGACCAGGCAACAGCACCCATTGCCCACCAGCCATCAAGTGCAGCAGCAG
CAGCATCAGCACCAGCATCAACAGCAGCAGCAGCAGCAACATCATCACCA
GCATCAGCAACAACAGCATCAGCAACAGCAGCACATCAGATGCAGCATCA
TCAAATCCATCATCAGACGGCGCCCAGGAAGCCGCCCAAGAAGCAACGCC
GAAATCCTCCACCACCAATCTTACGCCAGATACTCAACAAACCTAAACAA
TCTTCAGCAGCAGCACTAAGCACCCAATTCGAACATAGGTCGACGGCGGC
AAGTTGCAAGTTCATCCTCCTCCATCGGCCCTCGCTGCACCCATGCCAAA
CCATCTGGTCCAATGCGCACGTTTTCGCACGCCAAGAAACATGGCTTGAC
FMO13012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dx-RA | 3828 | CG3929-RA | 415..1529 | 9..1138 | 5105 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6534413..6534902 | 9..498 | 2435 | 99.8 | Plus |
| X | 23542271 | X | 6535520..6536086 | 497..1072 | 2300 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:22 has no hits.
FMO13012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:16 Download gff for
FMO13012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 398..1527 | 1..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:02 Download gff for
FMO13012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 409..1538 | 1..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:03 Download gff for
FMO13012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 409..1538 | 1..1150 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:03 Download gff for
FMO13012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6534407..6534901 | 1..497 | 98 | -> | Plus |
| X | 6535521..6536155 | 498..1150 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:02 Download gff for
FMO13012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6428440..6428934 | 1..497 | 98 | -> | Plus |
| arm_X | 6429554..6430188 | 498..1150 | 95 | | Plus |
