FMO13013.5prime Sequence
1187 bp (1075 high quality bases) assembled on 2013-01-30
> FMO13013.5prime
CAGTCGACATGGCATCAATATCGGATGACGGCATGGCGCTGAGTGGCTAC
CTCAAGAAGCTGAAGACCATGAAGAAGAAGTTCTTTGTGCTGTACGAGGA
GACGAGCACTTCGGCAGCCCGGCTGGAGTACTACGATACCGAAAAGAAGT
TCCTGCAAAGAGCCGAGCCAAAAAGGGTTATATATCTGAAGAATTGCTTC
AACATCAATCGCCGTTTGGACACCAAGCATAGATTTGTCATTGTGCTCTC
CTCCAGAGACGGTGGATTCGGCATCGTTCTCGAGAACGAAAATGATTTAC
GCAAATGGTTGGACAAACTACTAGTTCTACAAAGGAACATAGCCAATTCG
AATGGAACAGCGCACTCACCTTATGACCACGTTTGGCAAGTTGTCATTCA
AAAGAAGGGTATTTCGGAGAAAGTTGGAATCACCGGAACCTACCACTGTT
GCCTTACTTCAAAATCCCTGACATTCGTGTGCATTGGACCGGAGAAGACG
CCCAATGGCGAGGATCGCGTTGCGAGCATTGAAATACTTTTGACCACGAT
CAGGCGATGCGGTCATGCATCCCCACAATGTATATTCTACGTGGAACTTG
GCCGCCAAAGTGTCTTGGGATCTGGTGATCTGTGGATGGAGACGGATAAC
GCAGCTATTGCTACTAATATGCACAACACGATACTGAGCGCTATGTCAGC
CAAAACAGAGTCGAACACGAATTTAATAAACGTTTATCAGAATAGACCTG
ACTTAAGTCACGAGCCCATGAGAAAGCGATCGTCGTCTGCAAACGAAGCA
TCGAAGCCGATAAACGTAAATGTCATACAAAATAGTCAAAACTCTCTCGA
ATTGCGCAGCTGCAGTTCGCCCCATAACTATGGTTTCGGCAGAGAGAGAT
GCGATAGCTTACCAACCAGAATGGAACCCTAGCGAGTCCAGCAATCAAAC
GTACTTTGGTTCCAACCATGGACTGCGATCCAATACTATATCTGGCATCC
GTCCGCACCTCACACAGCATAGTATAGTCCAACGTTCACCATGCCATTAG
ATGCTCAGAATCCGAAGAGTCATCATAGGTCGATGATTCGGACGAACAAC
GGCAGTTTAGCACCTACAGAATAAACACGCGGTCATCGGAACGCATTCTG
GAGACACATTGATGAACTTGCCAGTGCGGAAATATTT
FMO13013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 3578 | CG5686-RC | 546..1740 | 8..1187 | 5375 | 97.5 | Plus |
| chico-RB | 3104 | CG5686-RB | 72..1266 | 8..1187 | 5375 | 97.5 | Plus |
| chico-RA | 3229 | CG5686-RA | 197..1391 | 8..1187 | 5375 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10245655..10246022 | 375..8 | 1840 | 100 | Minus |
| 2L | 23513712 | 2L | 10244908..10245105 | 884..687 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 10245410..10245591 | 556..375 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 10245220..10245352 | 688..556 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 10244654..10244854 | 1075..882 | 650 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:35 has no hits.
FMO13013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-30 10:18:23 Download gff for
FMO13013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 183..1377 | 8..1187 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:45 Download gff for
FMO13013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 197..1391 | 8..1187 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:46 Download gff for
FMO13013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 197..1391 | 8..1187 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:46 Download gff for
FMO13013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10244910..10245103 | 689..882 | 100 | <- | Minus |
| 2L | 10245220..10245351 | 557..688 | 100 | <- | Minus |
| 2L | 10245410..10245590 | 376..556 | 100 | <- | Minus |
| 2L | 10245655..10246022 | 8..375 | 100 | | Minus |
| 2L | 10244601..10244853 | 883..1125 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:45 Download gff for
FMO13013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10244601..10244853 | 883..1125 | 92 | <- | Minus |
| arm_2L | 10244910..10245103 | 689..882 | 100 | <- | Minus |
| arm_2L | 10245220..10245351 | 557..688 | 100 | <- | Minus |
| arm_2L | 10245410..10245590 | 376..556 | 100 | <- | Minus |
| arm_2L | 10245655..10246022 | 8..375 | 100 | | Minus |
